G1873079


Basic Information

Item Value
gene id G1873079
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 47021740 ~ 47022513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2142852
ttaaaaatcctacaatgtgattttctggattttttttttctctcattttgtctatcatagttgaagtctacctatgatgaaaattacaggcttgcacaattggtggctgactaaatacttttttgacccaCTGTAACTCTGTGCTCCGTGTAATGTACTTGTGTGCAGTGGTGGAAGTTAGCGAAGAAGACTGcttttttacaaccaaatctaTTTTGGTTGTAAATGGGATGTTATTGAATAGTCCCAGACACTTTTTTTGCGATTTCACTTGTTTTTTAAAAACTTACCCCAAACCAGCGATTGACTTCCTCATTCTCGGGGTGCAGTATGGGGGATctgaaaaaacatgaacaaaagCTCAAAAAACACCCAAATATGTTGTTTTAGAAACAGGaaagctctcagtatagtgatgcaggtctttagatgtcGTACACATGAAATTGTATCATTCCAAACATTATATTACATTTTGTAGCAACTCCTCTCCAGCCACTCTAGCAGCAGGCTACACAGAGAATGGAACAGCTGCATAGGGGAAACAGCTTGGGTCGCACAAAATTGAATATAACGTACAGAATGGaacaatttcatgtgtacaacatctaaagacctgcatcactatatGGAGAGCTTTCCTGTTTTACAAACCACATATTTGGGTGTTTTTAGAGcttttgttcatgttttttcagAGCCCACATACTACACAACGAGGAAGTGAATCTCTGGTttggggtaagttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2142852 True 749 lncRNA 0.38 2 47021740 47022513

Neighbor

gene id symbol gene type direction distance location
LOC110502866 LOC106609338 coding downstream 13410 47002000 ~ 47008330 (-)
chadlb LOC106609330 coding downstream 20042 46992374 ~ 47001698 (-)
LOC110502858 LOC106608924 coding downstream 86837 46911510 ~ 46934903 (-)
LOC110502855 LOC106608961 coding downstream 139232 46875863 ~ 46882508 (-)
tha1 LOC106608997 coding downstream 333383 46685639 ~ 46688357 (-)
LOC110502870 PHF5A coding upstream 45384 47067897 ~ 47079813 (-)
LOC110502873 LOC106609366 coding upstream 137259 47159772 ~ 47174198 (-)
LOC110502875 LOC106609407 coding upstream 152512 47175025 ~ 47187302 (-)
trnar-ccu-55 NA coding upstream 167203 47189716 ~ 47189788 (-)
LOC110502880 LOC106609454 coding upstream 209634 47232147 ~ 47254435 (-)
G1873044 NA non-coding downstream 58500 46963007 ~ 46963240 (-)
G1873040 NA non-coding downstream 64324 46957143 ~ 46957416 (-)
G1873036 NA non-coding downstream 71583 46948629 ~ 46950157 (-)
G1873032 NA non-coding downstream 78149 46943378 ~ 46943591 (-)
G1873029 LOC106600668 non-coding downstream 82832 46938539 ~ 46938908 (-)
G1873083 NA non-coding upstream 10475 47032988 ~ 47037069 (-)
G1873116 NA non-coding upstream 49196 47071709 ~ 47072257 (-)
G1873096 NA non-coding upstream 77693 47100206 ~ 47102523 (-)
G1873157 NA non-coding upstream 131846 47154359 ~ 47154767 (-)
G1873043 NA other downstream 60087 46960622 ~ 46961653 (-)
G1873030 NA other downstream 79283 46941286 ~ 46942457 (-)
G1872556 NA other downstream 224090 46797235 ~ 46797650 (-)
G1872165 NA other downstream 991933 46027920 ~ 46029807 (-)
G1868940 LOC106611807 other downstream 3520307 43486868 ~ 43501433 (-)
G1873183 NA other upstream 235080 47257593 ~ 47312395 (-)
LOC110502901 NA other upstream 1498166 48520679 ~ 48528302 (-)
LOC110503133 LOC106609742 other upstream 1615478 48637596 ~ 48641914 (-)
LOC110502911 LOC106609787 other upstream 1707099 48729606 ~ 48838648 (-)

Expression


Co-expression Network