G1873183


Basic Information

Item Value
gene id G1873183
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 47257593 ~ 47312395 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2143011
tttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatatcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaagaagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatatcTGTCTCttatattctttatccctttacacttgtgtgtataaggtagtcgttttggaattgttaggttagattacttgttggttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattcacat
>TU2143012
CTCAGGAATCACATACAAAATATAGCTGGCGTGCTAGCTAAAGAAGCTAATATTATTTCCCCTTTCATCTGCGGTGGCTAAAGTGCTTCAGTGAAAAACAACAACCTAAACGAATAACGAAGTATGTGGCTAACAAAGAAAAATACTCGTTGGTGCTTTTGATCTGTAAATACTATGATAACGTAAACCTAGCTAATTGTCTCttatattctttatccctttacacttgtgtgtataaggtagtcgttttggaattgttaggttagattacttgttggttattactgcattgtcggaactagaagcacaagcatttcgctacactcgcattcacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2143011 False 758 TUCP 0.41 2 47257593 47259933
TU2143012 True 336 lncRNA 0.37 2 47257593 47312395

Neighbor

gene id symbol gene type direction distance location
LOC110502880 LOC106609454 coding downstream 3158 47232147 ~ 47254435 (-)
trnar-ccu-55 NA coding downstream 67805 47189716 ~ 47189788 (-)
LOC110502875 LOC106609407 coding downstream 70291 47175025 ~ 47187302 (-)
LOC110502873 LOC106609366 coding downstream 83395 47159772 ~ 47174198 (-)
LOC110502870 PHF5A coding downstream 177780 47067897 ~ 47079813 (-)
LOC110502884 LOC106589545 coding upstream 138272 47450667 ~ 47458009 (-)
LOC110502890 LOC106609275 coding upstream 488707 47801102 ~ 47889311 (-)
LOC110502894 LOC106609588 coding upstream 728193 48040588 ~ 48079485 (-)
LOC110502896 rhbl4 coding upstream 845316 48157711 ~ 48289997 (-)
LOC110502897 LOC106609622 coding upstream 1049011 48361406 ~ 48372720 (-)
G1873170 LOC106609444 non-coding downstream 29337 47210625 ~ 47228256 (-)
G1873150 NA non-coding downstream 59214 47197349 ~ 47198379 (-)
G1873157 NA non-coding downstream 102826 47154359 ~ 47154767 (-)
G1873096 NA non-coding downstream 155070 47100206 ~ 47102523 (-)
G1873213 LOC106609422 non-coding upstream 11598 47323993 ~ 47324719 (-)
G1873270 NA non-coding upstream 78276 47390671 ~ 47392616 (-)
G1873271 NA non-coding upstream 81662 47394057 ~ 47426010 (-)
G1873272 NA non-coding upstream 82711 47395106 ~ 47395588 (-)
G1873268 NA non-coding upstream 89259 47401654 ~ 47428759 (-)
G1873043 NA other downstream 295940 46960622 ~ 46961653 (-)
G1873030 NA other downstream 315136 46941286 ~ 46942457 (-)
G1872556 NA other downstream 459943 46797235 ~ 46797650 (-)
G1872165 NA other downstream 1227786 46027920 ~ 46029807 (-)
LOC110502901 NA other upstream 1208284 48520679 ~ 48528302 (-)
LOC110503133 LOC106609742 other upstream 1325596 48637596 ~ 48641914 (-)
LOC110502911 LOC106609787 other upstream 1417217 48729606 ~ 48838648 (-)
G1875310 NA other upstream 1992124 49304519 ~ 49307135 (-)
LOC110503141 LOC106610139 other upstream 2469217 49732121 ~ 49855083 (-)

Expression


Co-expression Network