Gene
RNA
| Item | Value |
|---|---|
| gene id | G1874809 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048587.1 |
| NCBI id | CM023241.2 |
| chromosome length | 62880378 |
| location | 48727423 ~ 48727736 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tc1 transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2144855 | True | 314 | lncRNA | 0.46 | 1 | 48727423 | 48727736 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110503134 | LOC106610058 | coding | downstream | 2843 | 48720060 ~ 48724580 (-) |
| LOC110502909 | cq039 | coding | downstream | 31096 | 48686539 ~ 48696327 (-) |
| LOC110502905 | LOC106610051 | coding | downstream | 69378 | 48651176 ~ 48658045 (-) |
| LOC110503133 | LOC106609742 | coding | downstream | 85509 | 48637596 ~ 48641914 (-) |
| LOC110502904 | LOC106609741 | coding | downstream | 132555 | 48562471 ~ 48594868 (-) |
| LOC110502911 | LOC106609787 | coding | upstream | 1870 | 48729606 ~ 48838648 (-) |
| LOC110503135 | trrap | coding | upstream | 237542 | 48965278 ~ 49138248 (-) |
| LOC110503068 | LOC106609795 | coding | upstream | 414140 | 49141876 ~ 49145958 (-) |
| tmem130 | LOC106610061 | coding | upstream | 423026 | 49150762 ~ 49156151 (-) |
| LOC110503138 | LOC106609842 | coding | upstream | 515987 | 49243723 ~ 49254357 (-) |
| G1874808 | NA | non-coding | downstream | 1356 | 48725632 ~ 48726067 (-) |
| G1874805 | NA | non-coding | downstream | 7546 | 48719607 ~ 48719877 (-) |
| G1874745 | NA | non-coding | downstream | 12395 | 48712180 ~ 48715028 (-) |
| G1874758 | NA | non-coding | downstream | 111010 | 48615457 ~ 48616413 (-) |
| G1874863 | NA | non-coding | upstream | 124188 | 48851924 ~ 48852264 (-) |
| G1874865 | NA | non-coding | upstream | 125364 | 48853100 ~ 48853480 (-) |
| G1874866 | NA | non-coding | upstream | 127756 | 48855492 ~ 48855694 (-) |
| G1874881 | NA | non-coding | upstream | 152962 | 48880698 ~ 48881469 (-) |
| G1874886 | NA | non-coding | upstream | 161420 | 48889156 ~ 48889372 (-) |
| LOC110502901 | NA | other | downstream | 205751 | 48520679 ~ 48528302 (-) |
| G1873183 | NA | other | downstream | 1467490 | 47257593 ~ 47312395 (-) |
| LOC110502870 | PHF5A | other | downstream | 1647633 | 47067897 ~ 47079813 (-) |
| G1873043 | NA | other | downstream | 1765770 | 46960622 ~ 46961653 (-) |
| G1875310 | NA | other | upstream | 576783 | 49304519 ~ 49307135 (-) |
| LOC110503141 | LOC106610139 | other | upstream | 1053876 | 49732121 ~ 49855083 (-) |
| G1875984 | NA | other | upstream | 1323555 | 50051291 ~ 50052791 (-) |
| LOC110503025 | LOC106610281 | other | upstream | 1484314 | 50212050 ~ 50253496 (-) |
