G1875080


Basic Information

Item Value
gene id G1875080
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 49213570 ~ 49217337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2145142
CCTCAGCATTGTCTCATGCTTTTCCTTCCAAATGTGTCTTATGACCAACAAAATTGCAACGTAAACAGACTCTAGTGGTAAACATAGACATCTTTATTTAGACATTAATGTGAGTGTTTATGGCAATCACATTAACATAACTTAAAGCTATTTACAATGGGGCAGGAAATAATGGTAGCCTACTCATTCGTTCAATATAAAATAAAAACGACTCATTCAATTAAAAGACAACCAAATTGTCAATTTCATCTCATGTATTAAGGGACATACACATTGTCAGTTATACAGTCTTCATACAGATATGCAGTAGGTTATGGCAGTAAAATGCAAAGACAGTACATTAAtttttaaatttttaaaaaaaaataaagaccaTGTTAAGGTTTATCCTGTTTTACTGTGAGATAACATAACTTTAGTCTACAGAACACCATGGTAAAGCATTTTCCTTGTCACCTTTAGTGAATGACAGAATCAGTATCTGAACAGAGATAGAAGAGGAACCATAAACTTATTTGGGAATCATCAATTATCATGGACAGCAGTGTGTATCATGAATTCCTCTACACTGAAGGAAGAGAAAAACCTATATACTCTTTCgatatactgcatactgcatggttcATACGGTATTTCTACCAATAACAATGTTATTGTGATTTACAACAATTGTGTATTTGTAAAACACAGTCTTCAGCTTACCATGAAAAAAACTAAGATAAATGGTCTCCATACAACTTTATAAACATCATGAACCTTTAAACAATAAACATCATGAACCTTTAAACAAgtatgaaaaaaaaaatacttttaaaacTATGAAGAAATAGCATAGCAGAGTCCATATGTCAATCCATTCCCCTTTCAGCATACATTCATTTAGTCTATGGCTAATCAAAAATCACTTATTTTCATTTTAAACATAACTTACATGAGCTATATTCATTCTTCCATAAACTCTCATTGTTTACACTCAATACACTTAGTGGGGGCTGAGTAGACTTCTTTATGATGAAATGAGTTTTAAAAAATGATACTTCTCTAATTTGTTTAAAATGTACGGATAAATAGTAGCCTCCCCATTGAAAAATGGTTACGTcataatgaaaaaataaatatggCAAAAAATGTAGCACTTCTTTCCCCAACTAGTGTCCCCGTGCCTCATTCCTACAACTACTACAGACAGAATGCAGTGCCTAGAGAAggtctacagacagaatacagtgCCTAGAGAAggtctacagacagaatacagtgCCTAGAGAAggtctacagacagaatacagtgCCTAGAGAAggtctacagacagaatacagtgCCTAGAGAAggtctacagacagaatacagtgCCTAGAGAAggtctacagacagaatacagtgCCTAGAGAAGGTCTACAGATAGAATACAGTGCCTAGTGAAGGTCAACACACCCCAAATATTACAAAAATAAACTAATAATCATTTTGCCTTCCTACCGATGTACACAACCTAATCCACATTTTCAGTGAAATAAATTATAGAAAATGttcaaaatgaaaaagaagaaaaaaaaaagaagtctTGATTGTGTATgacttcacaccccagagttaataccTGGTGGAAACACtgttggcagccattacagctgtgaataattTGGAATAAAATTCCAACTCTCGACAACTCTTAGGGAAATATATATCCAtcgtttttgtcaaaattgctcaagaGCAGTAAATTATCATATAATAActcatgttataggtatgcttgtcaacggcagggactggggagtttgtcataatcaaaaataaatatgaaaggaaCAAAGTCCAGGTAAGAAGTTAGAGAAAACCCTGcctcagtcttctgaaaacctaaccctgggatagATGTTTTTGCGGAACAATTACACAAATGTTAATGCCGAAGACTCCAAAATGTtttccaagaggtgttgagtgttcctCAGTAGTCCACTCTCAGTCCTGACTAACTTTGCTTGAAAATCAGAGACACGGTTTGAATATTGgtgtccatcaatgattcccaaccaaatgtaatgagcttgagcaattttgcCAAAGCAATGATTGCCCTAATAGTACAACAAATGATTcccagctgtaatggctgccaaaggtgcttccacccagtattaactctggggtgttGTATAATTTATCTTTCAGTCTGAAAATGTGAAGTAGGTTGTGTTGGTCAGTGTAGgtcagtagaaaaaaaaaacatttattcccTCTGTAGATTACATTTTAAGGCAACAAACTTTGAAGACTCTGCAaagggtgtgtagactttcactagcgactgtatatatatttatttaaaaaacaatctGAACGCAAAAGAGTGAGGAAGGTAGCCTGGATTTGATTATGTTTCAGCACTGCCCATAATCATTGTCACTTCACTACTCTGTTTTACAATGGAGCTGGCTACAATGGAGCTGGCTACAACGGAGCTGGCTACAACGGTGCTGGCTACAACGGAGCTAGTAACAACGGTGCTGGCTACAACGGAGCTGGTTTGCTGAAGCGGAGTAGAATCCATGCTTTGTTGACATATTGTTGGACTGTAATTCTGGAGTGTTGGTGGTGCTTTATCATTCCTCTGTCTGAATGAGCTCTGGTTATTAGACGTTGGGTGCTGATCTGTCGTTGGTCACTGTAGGTCTCAGTTTGACAGTGGCAAAGGGATTCCCACCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2145142 True 2714 lncRNA 0.37 2 49213570 49217337

Neighbor

gene id symbol gene type direction distance location
tmem130 LOC106610061 coding downstream 57419 49150762 ~ 49156151 (-)
LOC110503068 LOC106609795 coding downstream 67612 49141876 ~ 49145958 (-)
LOC110503135 trrap coding downstream 75322 48965278 ~ 49138248 (-)
LOC110502911 LOC106609787 coding downstream 374922 48729606 ~ 48838648 (-)
LOC110503134 LOC106610058 coding downstream 488990 48720060 ~ 48724580 (-)
LOC110503138 LOC106609842 coding upstream 26386 49243723 ~ 49254357 (-)
LOC110502914 NA coding upstream 37519 49254856 ~ 49283890 (-)
rsph10b LOC106609906 coding upstream 142473 49359810 ~ 49372872 (-)
LOC110502922 LOC106561172 coding upstream 157741 49375078 ~ 49379011 (-)
LOC110503140 LOC106609966 coding upstream 209685 49427022 ~ 49477361 (-)
G1875036 NA non-coding downstream 51870 49161364 ~ 49161700 (-)
G1874985 NA non-coding downstream 109516 49101656 ~ 49104054 (-)
G1875013 NA non-coding downstream 112674 49100662 ~ 49100896 (-)
G1875001 LOC106613263 non-coding downstream 136529 49076804 ~ 49077041 (-)
G1874999 NA non-coding downstream 139976 49073285 ~ 49073594 (-)
G1875269 LOC106609825 non-coding upstream 8930 49226267 ~ 49226718 (-)
G1875272 LOC106609825 non-coding upstream 11496 49228833 ~ 49240203 (-)
G1875277 NA non-coding upstream 15661 49232998 ~ 49268282 (-)
G1875284 NA non-coding upstream 24198 49241535 ~ 49243532 (-)
G1875294 NA non-coding upstream 57774 49275111 ~ 49275436 (-)
LOC110503133 LOC106609742 other downstream 571699 48637596 ~ 48641914 (-)
LOC110502901 NA other downstream 691898 48520679 ~ 48528302 (-)
G1873183 NA other downstream 1953637 47257593 ~ 47312395 (-)
LOC110502870 PHF5A other downstream 2133780 47067897 ~ 47079813 (-)
G1875310 NA other upstream 87182 49304519 ~ 49307135 (-)
LOC110503141 LOC106610139 other upstream 564275 49732121 ~ 49855083 (-)
G1875984 NA other upstream 833954 50051291 ~ 50052791 (-)
LOC110503025 LOC106610281 other upstream 994713 50212050 ~ 50253496 (-)
G1876460 NA other upstream 1237984 50455321 ~ 50455709 (-)

Expression


Co-expression Network