G1875272 (LOC106609825)


Basic Information

Item Value
gene id G1875272
gene name LOC106609825
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 49228833 ~ 49240203 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2145370
agcAGGCGTCAGTAGGGTGACTCCCAGTCTACAGAGCACGTCTCCCTTGTTACTGATGGCCCACAGAGGGATCGGCTCAACAATGCTCTGAGCGCCACACGGGATGATGGTCACGTCACTCAACGGGATGGGTGGGACTTCCTGCCACGGCCCTGTGGTGGTCAGTTTACACTTCCTGGCCCATCGCCTACGACGGACAAAGTCCTTCAAGGTCTTGTGGCCATGATACGACGTTGGGAAATCAGCTGCATATTGccaaccctctctgtctgtccctccagaGATACCGTAGTCAATGGCCCAGTCTGCCACCCATGTCCAATGAGGGGATGGAGGCTTGGTGTTGGCCTTGGTACACTCCTGCAGTCCTGTTGCATCACTCCACATGTAACGGTCTGTTGGGAGGCCTCTGTTGGTATATCCTGTGACTGGGTTCCACCTCTGGTTCTCATAAATGTAGACACACTTCACATCTGTCTGGGTGTAGATGTTATCTGTGCTTCTGGCCAGAACATCTGATCGCAGGGTGTGGGGTAGGGACAGGTCTCCAGGCTAGGTGAAGGCTCACAGACAAAGACGTCTCCTTTACAGGTGACTGACCAGAGGGCCTGTTTAGAGGGGGGACCCTGGATCCCCCGGGAGTCACAGCACGACACACTCAGCAGGGCCAGCCAGTCGTGCATCTCCAGCTCGGTGGCAGCAGCCAGTCTGATAGGCCACCTCTGTTTGGTCCTCTCTGCTGTGTAGATGGCAAACGTGTGTTTGGAGTCATTCAGCACCGGCACCAAGATAGTCACCTCGTTGATGAACGCATGCAGGTACTTCTTCTCCTCGTTGAAGTTGTAGTAGAGGAAGAGAATACCATCCTGGTTTCCCTCTGGTCCTGAGAACTGCTCCAGGGCAAACCTCACGTCCACCCACTTATGGGGCTTCCAGTCCCTCCACCACTGCATGGTCCCTTTCTTCACCCACACAGACTGGGactgaggggggagggagggaaggaggggacggaggggggagggagggagagaagagg
>TU2145371
agcAGGCGTCAGTAGGGTGACTCCCAGTCTACAGAGCACGTCTCCCTTGTTACTGATGGCCCACAGAGGGATCGGCTCAACAATGCTCTGAGCGCCACACGGGATGATGGTCACGTCACTCAACGGGATGGGTGGGACTTCCTGCCACGGCCCTGTGGTGGTCAGTTTACACTTCCTGGCCCATCGCCTACGACGGACAAAGTCCTTCAAGGTCTTGTGGCCATGATACGACGTTGGGAAATCAGCTGCATATTGccaaccctctctgtctgtccctccagaGATACCGTAGTCAATGGCCCAGTCTGCCACCCATGTCCAATGAGGGGATGGAGGCTTGGTGTTGGCCTTGGTACACTCCTGCAGTCCTGTTGCATCACTCCACATGTAACGGTCTGTTGGGAGGCCTCTGTTGGTATATCCTGTGACTGGGTTCCACCTCTGGTTCTCATAAATGTAGACACACTTCACATCTGTCTGGGTGTAGATGTTATCTGTGCTTCTGGCCAGACCTAACAAAAACAAGAGAGGGGTTATAGTCATGAGCTGAGACAAAACAGCCATGAAACATAACcttacaccctgaccaaacttGCCCCGGGCATGCGCCTGTTGAAACATATCCTTACACCCTAACCAAACTGGTCCAGAGTGTGCGCCTGTTGAAACATACCcttacaccctgaccaaactgGCCCCGGGTGTACGCCTGTTGAAACATACCattacaccctgaccaaactgGCCCCAGGCCTGTTGAAACATACCCTTACACCCTAACCAAACTGTCCCCGGACATGAGCCTGTTGATTTTGTCTATCCACACTAGACGCGATCatgacacacaggttaaaataccaaaaccaactctgaaccaactatattcatttggggacaggtcgaaacacttacagtaccagtcaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2145370 False 1039 lncRNA 0.56 7 49228833 49240203
TU2145371 True 924 lncRNA 0.51 4 49238598 49240203

Neighbor

gene id symbol gene type direction distance location
tmem130 LOC106610061 coding downstream 72682 49150762 ~ 49156151 (-)
LOC110503068 LOC106609795 coding downstream 82875 49141876 ~ 49145958 (-)
LOC110503135 trrap coding downstream 90585 48965278 ~ 49138248 (-)
LOC110502911 LOC106609787 coding downstream 390185 48729606 ~ 48838648 (-)
LOC110503134 LOC106610058 coding downstream 504253 48720060 ~ 48724580 (-)
LOC110503138 LOC106609842 coding upstream 3520 49243723 ~ 49254357 (-)
LOC110502914 NA coding upstream 14653 49254856 ~ 49283890 (-)
rsph10b LOC106609906 coding upstream 119607 49359810 ~ 49372872 (-)
LOC110502922 LOC106561172 coding upstream 134875 49375078 ~ 49379011 (-)
LOC110503140 LOC106609966 coding upstream 186819 49427022 ~ 49477361 (-)
G1875269 LOC106609825 non-coding downstream 2115 49226267 ~ 49226718 (-)
G1875080 NA non-coding downstream 11496 49213570 ~ 49217337 (-)
G1875036 NA non-coding downstream 67133 49161364 ~ 49161700 (-)
G1874985 NA non-coding downstream 124779 49101656 ~ 49104054 (-)
G1875013 NA non-coding downstream 127937 49100662 ~ 49100896 (-)
G1875284 NA non-coding upstream 1332 49241535 ~ 49243532 (-)
G1875294 NA non-coding upstream 34908 49275111 ~ 49275436 (-)
G1875310 NA non-coding upstream 64316 49304519 ~ 49307135 (-)
G1875335 NA non-coding upstream 92336 49332539 ~ 49333029 (-)
G1875342 NA non-coding upstream 99600 49339803 ~ 49340067 (-)
LOC110503133 LOC106609742 other downstream 586962 48637596 ~ 48641914 (-)
LOC110502901 NA other downstream 707161 48520679 ~ 48528302 (-)
G1873183 NA other downstream 1968900 47257593 ~ 47312395 (-)
LOC110502870 PHF5A other downstream 2149043 47067897 ~ 47079813 (-)
LOC110503141 LOC106610139 other upstream 541409 49732121 ~ 49855083 (-)
G1875984 NA other upstream 811088 50051291 ~ 50052791 (-)
LOC110503025 LOC106610281 other upstream 971847 50212050 ~ 50253496 (-)
G1876460 NA other upstream 1215118 50455321 ~ 50455709 (-)

Expression


Co-expression Network