G1875284


Basic Information

Item Value
gene id G1875284
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 49241535 ~ 49243532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2145386
ACCATGCACACTATTAGAAGGAAGACATATACAGCTCAATAACACCCTTGTTCGAGTTGGAACAGTACCGGCTTATAGTGTTCTATTTTACACCATAATCAACAAAAGCAATGGAATCCTCAAGAGAAAAGTCCTCCGATAGACTTCTGATTTTCATGCTATGGTGTACCCCCTTCACATCCCAAAGCATACGTGTAATGTGTCCCTCCTTTAGGATAAATCCTGTACTGGAGTAACAGCAGTATGTACTCAGTGTCATTATCAAACAATGCACTTGTTGTATTATGAACTGCCATAGGAAGATAAAGTGACAGTATTCACAGATATACAGTTTTCTGGACAATTAATGATTTGTAGTTGCAGTATATCAGTCACTATTGGATCTTCATCTTTCAGTTACAGCAGTAAGATGAATGAATGCCCAAACGTGATAGTTTCAGCCTTTGTGGTTTAAAGATAATAGTTAAATATTACTTAATATGACTGATATTTTATGATTTTTATATATCAATGTACAATAACCCAACCTTGAAATATCACAATGAAAACATTTATACTATACTTGTATTCAGATTTataaaaactatatatatatatatatatgttcttTCCACCAACCCCTTCACGTGTGTTGGCTGCCAGTCACGTGTGTTGGCTGCCAGTCACGTGTGTTGGCTGCCAGTCACGTGTGTTGGCTGCCAGTCACGTGTGTTGGCTGCCAGTCACGTGTGTCGGCTGCCAGTCACGTGTGTTGGCTGCCAGTCATTACTGCTAAAATCATAGGAGGTGAAAAATATGCAGATTATAGTGTTAAAACTCTTATTTTCCTGGGAAAcaaacaaatgaacttttaagccTTTCAAAGACATCATTTTTCAAGcaattcacattttttttaatgaaaataagaatatgtactttCTTTTCAAGAGTAACACAAGAATGCTATAGAAAAAACTGTCTCCCTAGGAACATGGACATACAAACTCTTCACTGTGGCCATCACAGATACAAACCATTCAGGGGAAAGGCATATAACTGTAAAAGCGCCGTGTGCTATCAAAGGATTCATAACCTAAATTATTCTCGGTAAATAAACCCTTAATGTTTTTGTTGTGACTCCAGTGGAATCTCTACGTTACCAGCAGGTACAAAGTAGGAAGTATAGTAACTTATTGGAACAGAATCAGTAAACACTACTGATCGCCCACCTTCACAGAATCATACATCGCCCACTTTCACAGAATCATACATCGGCCCAATAACATTGAATACCCCAGAAAACTCTATCACTAATATAACAAACAAAACATCTATTCACATacagacagaaaaaaaaacattcaaccaaaaaataacaataaataaaACTAAAAGTTATCTTAAGACCACAGATTTAAATAACGATGATGCAATGTTCGAAGACTGAGTCACACAGTTTAAAAATGACTAGTGCTCTATGTGGGAAATGTTGAACATGACCTGCTAGCTGTGAAGAGAGAAGGTGATTGGCTGAGTCAAGCTGAGGGCACAGAGCTAGGGTTCAAAGGTAATTGAACACAACCAGGTGATTGGACAGAAGAAGAGTTTGACTTCAGACACTTAGAGGGTGAGGCTGGAGCTGGGagctacagtacagtgtgggTGGTGGAGTAGTTGCATTGGGGCTTTTGTTTTGTAGCGAGAGTTGGGCTGAAGACAGAACAGAGATACAGTGTCCACTGGCAAATactctacgtgtgtgtgtgtttaacaccTGACAGCGTTCCCGTTCTCCTCTATGTTCCTGAAGGAGAGCGGTCTGCGGGGTGGATGGGTGCGGAGGGGGTCCGTCAGGGAGGCGGTAAGGGAGGGTGTCAGGGAGGGCATACGGACACGGGGAGCCTCGAAGGAGTTCCCTCTCACAGTGATGTGGTCCCAGCc

Function

NR:

description
tectonin beta-propeller repeat-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2145386 True 1923 lncRNA 0.40 2 49241535 49243532

Neighbor

gene id symbol gene type direction distance location
tmem130 LOC106610061 coding downstream 85384 49150762 ~ 49156151 (-)
LOC110503068 LOC106609795 coding downstream 95577 49141876 ~ 49145958 (-)
LOC110503135 trrap coding downstream 103287 48965278 ~ 49138248 (-)
LOC110502911 LOC106609787 coding downstream 402887 48729606 ~ 48838648 (-)
LOC110503134 LOC106610058 coding downstream 516955 48720060 ~ 48724580 (-)
LOC110503138 LOC106609842 coding upstream 191 49243723 ~ 49254357 (-)
LOC110502914 NA coding upstream 11324 49254856 ~ 49283890 (-)
rsph10b LOC106609906 coding upstream 116278 49359810 ~ 49372872 (-)
LOC110502922 LOC106561172 coding upstream 131546 49375078 ~ 49379011 (-)
LOC110503140 LOC106609966 coding upstream 183490 49427022 ~ 49477361 (-)
G1875272 LOC106609825 non-coding downstream 1332 49228833 ~ 49240203 (-)
G1875269 LOC106609825 non-coding downstream 14817 49226267 ~ 49226718 (-)
G1875080 NA non-coding downstream 24198 49213570 ~ 49217337 (-)
G1875036 NA non-coding downstream 79835 49161364 ~ 49161700 (-)
G1874985 NA non-coding downstream 137481 49101656 ~ 49104054 (-)
G1875294 NA non-coding upstream 31579 49275111 ~ 49275436 (-)
G1875310 NA non-coding upstream 60987 49304519 ~ 49307135 (-)
G1875335 NA non-coding upstream 89007 49332539 ~ 49333029 (-)
G1875342 NA non-coding upstream 96271 49339803 ~ 49340067 (-)
G1875344 NA non-coding upstream 97411 49340943 ~ 49341631 (-)
LOC110503133 LOC106609742 other downstream 599664 48637596 ~ 48641914 (-)
LOC110502901 NA other downstream 719863 48520679 ~ 48528302 (-)
G1873183 NA other downstream 1981602 47257593 ~ 47312395 (-)
LOC110502870 PHF5A other downstream 2161745 47067897 ~ 47079813 (-)
LOC110503141 LOC106610139 other upstream 538080 49732121 ~ 49855083 (-)
G1875984 NA other upstream 807759 50051291 ~ 50052791 (-)
LOC110503025 LOC106610281 other upstream 968518 50212050 ~ 50253496 (-)
G1876460 NA other upstream 1211789 50455321 ~ 50455709 (-)

Expression


Co-expression Network