XLOC_037800 (crygm3)


Basic Information

Item Value
gene id XLOC_037800
gene name crygm3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22354281 ~ 22361681 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074201
ACTTGAAACATGATGATGGAAATAGCAGACAGGCAGGCCACGGAAATCCCAGACTGAGCAGAAAAAAAGATGCAGGAGAGGACTGGAAACAGAACAAAACTAACAAACTAGACAAGACAAAATGCAGACAGTAAACAAACAAAGAGTAAAAAAGGCTGTGATAGCAcaatttaaattaacaaaaatcacAGACCTGCTTGATCATCAGGTTCCAGGGTATTTGAATGACAAAAACCATTATCAGCCTATAAAGTATAAAAGGCAACGGTCAGACAGACAGCAACTGGACAGAATCCCACGAGGACTAGCAAACATGGGCAAGATCATCTTCTACGAGGACAGGAACTTCCAGGGTCGCTCCTATGAGTGCAGCACTGACTGCGCTGATATGTCTACCTACCTCAGCCGCTGCAACTCCTGCAGAGTGGAGAGTGGCTGCTTTGTGGTCTATGATCGTCCTAACTTCATGGGAAACCAGTTCTTTATGAGGAGGGGCGAGTATGCTGACTACATGCGCATGGGAATGAGTGACGGCATCAGGTCCTGTCGTGTTGTACCTCAGTACAGGGGACCCTACAGAATGAGGATCTACGAGAGGGATAACTTTGGAGGACAGATGTACGAGCTGACAGATGACTGCGATTCCTTCATGGACCGTTACCGCATCTCTGACTGTCAGTCCTGTCATGTGATGGACGGCCACTGGCTCATGTATGAGCAGCCTCACTACAGAGGCAGGATGATTTACTTCAGGCCCGGAGAGTACAGGAGCTTCAGGGATATGGGATACAGCAATGTCAGATTCAGCTCAGTTAGAAGAATCGTGGACCTGTGTTAAATTCACAGTCTGAAAGCATAAATGATAATATAAGCAAAGCAATAAAACTCtcaacatgcatttattttttgtctgtcGTTTTGCAATATTTTCACCATTTTATTATCTGTCAGCATACGCAAACTAAtggaaaacttaaaacaaaattaGAATGAATTTGATATATCCATAATGATCACAATTATTAATATCTAGATTATAAAAATACATCCGATATGCCCATCTTAGCGAAATcaaatgtttattatataatGTTTAGCAAATCATTGTTTGCTGTTAAAATACCAATTTAATCAATCATTacacattaaaacacatttattaaaatgtatacattaataATTCTGGCTAAATTTCAACTGACCATAGCACAA
>TCONS_00074202
GAATCCCACGAGGACTAGCAAACATGGGCAAGATCATCTTCTACGAGGACAGGAACTTCCAGGGTCGCTCCTATGAGTGCAGCACTGACTGCGCTGATATGTCTACCTACCTCAGCCGCTGCAACTCCTGCAGAGTGGAGAGTGGCTGCTTTGTGGTCTATGATCGTCCTAACTTCATGGGAAACCAGTTCTTTATGAGGAGGGGCGAGTATGCTGACTACATGCGCATGGGAATGAGTGACGGCATCAGGTCCTGTCGTGTTGTACCTCAGTACAGGGGACCCTACAGAATGAGGATCTACGAGAGGGATAACTTTGGAGGACAGATGTACGAGCTGACAGATGACTGCGATTCCTTCATGGACCGTTACCGCATCTCTGACTGTCAGTCCTGTCATGTGATGGACGGCCACTGGCTCATGTATGAGCAGCCTCACTACAGAGGCAGGATGATTTACTTCAGGCCCGGAGAGTACAGGAGCTTCAGGGATATGGGATACAGCAATGTCAGATTCAGCTCAGTTAGAAGAATCGTGGACCTGTGTTAAATTCACAGTCTGAAAGCATAAATGATAATATAAGCAAAGCAATAAAACTCtcaacatgc

Function

symbol description
crygm3 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens.

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050516-6 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens.

Ensembl:

ensembl_id ENSDARG00000078189

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074201 False 1212 mRNA 0.40 4 22354281 22361681
TCONS_00074202 True 607 mRNA 0.49 3 22354596 22355391

Neighbor

gene id symbol gene type direction distance location
XLOC_037799 crygm2f coding downstream 2001 22344595 ~ 22352280 (-)
XLOC_037798 crygm2d1 coding downstream 14699 22338578 ~ 22339582 (-)
XLOC_037797 crygm2d2 coding downstream 35770 22317479 ~ 22318511 (-)
XLOC_037796 crygm2d10 coding downstream 43362 22309838 ~ 22310919 (-)
XLOC_037795 crygm2d21 coding downstream 54869 22298246 ~ 22299412 (-)
XLOC_037801 NA coding upstream 256775 22618456 ~ 22626761 (-)
XLOC_037802 neb coding upstream 443457 22805138 ~ 22892838 (-)
XLOC_037803 arl5a coding upstream 541184 22902865 ~ 22918413 (-)
XLOC_037804 si:dkey-91i10.2 coding upstream 579281 22940962 ~ 22963897 (-)
XLOC_037805 rnd3b coding upstream 664643 23026324 ~ 23033818 (-)
XLOC_037770 NA non-coding downstream 536544 21816200 ~ 21817737 (-)
XLOC_037767 CR392366.1 non-coding downstream 921620 21432545 ~ 21432661 (-)
XLOC_037761 NA non-coding downstream 1148727 21194606 ~ 21205554 (-)
XLOC_037757 NA non-coding downstream 1549160 20802497 ~ 20805121 (-)
XLOC_037756 NA non-coding downstream 1567628 20784043 ~ 20786653 (-)
XLOC_037813 CR392363.2 non-coding upstream 1021733 23383414 ~ 23388075 (-)
XLOC_037814 NA non-coding upstream 1329577 23691258 ~ 23694572 (-)
XLOC_037815 NA non-coding upstream 1335383 23697064 ~ 23700635 (-)
XLOC_037823 NA non-coding upstream 1546402 23908083 ~ 23909865 (-)

Expression


Co-expression Network