XLOC_037805 (rnd3b)


Basic Information

Item Value
gene id XLOC_037805
gene name rnd3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23026324 ~ 23033818 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074214
GTCGAAGAGGTTTATTTCTCAGTGCAGCGCACAGAAGATGCCTTCACAGAGAGCACGATCAGTAGAGCTTCAGCTTTACTCTTAAACCATTTTCATCTCAAGCAAGGAGCACTGAGCACAACTTAAAGCGCTCTGAACATAACTACTGGACTATTTCTCTCATTCTTATGGACAGACTGGAGACTCGAGGTCAGCCGGTTGATGTTCAGCGACTGTGAATGAAGATGAGTTTCAGTTAGTTCATGATGGATCACCATCACGAtctcaaatgtaaaatagttgtGGTCGGAgacactcagtgtgggaagacgTCTTTGTTAAATGTCTTTGCCAAAGATTCCTTTCCAGAGAACTATGTTCCTACAGTGTTTGAGAACTACACGGCCAGTTTTGAGGTGGACACATTGAGAGTGGAGCTTAGTCTTTGGGATACTTCAGGCTCTCCATATTATGACAATGTGCGGCCTCTTTCTTACCCGGATGCTGATGCTGTTCTCATCTGTTTTGATATTGGTCGACCAGAGACTCTGGAGAATGTGCTAAGGAAGTGGAAGGGAGAAATTGAAGAGTTCTGTCCTAATACCAAAATCCTTTTGGTTGGATGCAAGTCAGACCTGCGTGCAGACCTGGCAACATTTGTACAGCTGTCCAATGACATTCCTTCATCATACGACCAGGGTTCAAACATGGCCAAGCTGATCTCGGCCCCTTACATCGAGTGCTCGGCACAGCAGTCCGAGAACAGCGTGAGAGACATTTTTCACATAGCCACACTGGCCTGCGTCAGTAAAAATAACAAGAGCGTGAAGCGCATCAAGTCCAGCAGAGCCACCAAGAGGACCTCGCGTGTATCCAGCAGGCCAGAGCTGGACTCGCATCTACACAAGACCAAGGCCAAAACCTGCACAGTCATGTGATTTCAAAAGCCATCCCATCTGCATGCATTTCTTCTAATATCAGGATTCTTTCTAAAAGTCCACCGGGGAATTAATGGGCGATGAACCGAAGGGAGATATTTTGCACTTTGCTAGTATTCTCGATACGTACTGAACTGAGTCAGCGACATGTATTAATAATGATGAAGCAGTCTATTTAAAAGCACCTCAGAGCATTTTTTTAGCCATCTTTGAAAACCTAAAGCAGGGAAAACCTCTGTGTGTTACTGTGTACTTTGTAGAAAGCCTCCAAAGATGATGGTCCTGGGGATTTTGCAGCGTAACCCAGTTTGTGGACGTAATTAACTCGGATTAACTTGCTAACCTCAGACCTGTCCtgcaccaaaaacaaaaatgctctCAATTAATGTCACAGATATACATTGTTGGTTGTTTTTTCTTTGTGAGGGATTAATATGAGGCAATAAACGAAGCATAACTGTC
>TCONS_00074215
GTCGAAGAGGTTTATTTCTCAGTGCAGCGCACAGAAGATGCCTTCACAGAGAGCACGATCAGTAGAGCTTCAGCTTTACTCTTAAACCATTTTCATCTCAAGCAAGGAGCACTGAGCACAACTTAAAGCGCTCTGAACATAACTACTGGACTATTTCTCTCATTCTTATGGACAGACTGGAGACTCGAGGTCAGCCGGTTGATGTTCAGCGACTGTGAATGAAGATGAGTTTCAGTTAGTTCATGATGGATCACCATCACGAtctcaaatgtaaaatagttgtGGTCGGAgacactcagtgtgggaagacgTCTTTGTTAAATGTCTTTGCCAAAGATTCCTTTCCAGAGAACTATGTTCCTACAGTGTTTGAGAACTACACGGCCAGTTTTGAGGTGGACACATTGAGAGTGGAGCTTAGTCTTTGGGATACTTCAGGCTCTCCATATTATGACAATGTGCGGCCTCTTTCTTACCCGGATGCTGATGCTGTTCTCATCTGTTTTGATATTGGTCGACCAGAGACTCTGGAGAATGTGCTAAGGAAGGTAAGCTGATCTTCAAGATGTTCGATTTGTTTATCGATGCTGTTTATAATGTCATAGCTCTCCTGAATTGTGTTTGGTCTAATCTCACAAGCCC

Function

symbol description
rnd3b Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Orthologous to human RND3 (Rho family GTPase 3).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0030865 cortical cytoskeleton organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0042995 cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-331 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Orthologous to human RND3 (Rho family GTPase 3).

Ensembl:

ensembl_id ENSDARG00000007396

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074214 False 1379 mRNA 0.44 5 23026324 23033818
TCONS_00074215 True 642 lncRNA 0.43 3 23030108 23033818

Neighbor

gene id symbol gene type direction distance location
XLOC_037804 si:dkey-91i10.2 coding downstream 62427 22940962 ~ 22963897 (-)
XLOC_037803 arl5a coding downstream 107911 22902865 ~ 22918413 (-)
XLOC_037802 neb coding downstream 133486 22805138 ~ 22892838 (-)
XLOC_037801 NA coding downstream 399563 22618456 ~ 22626761 (-)
XLOC_037800 crygm3 coding downstream 664643 22354281 ~ 22361681 (-)
XLOC_037806 lypd6 coding upstream 37331 23071149 ~ 23118350 (-)
XLOC_037807 lypd6b coding upstream 108352 23142170 ~ 23181062 (-)
XLOC_037808 kif5c coding upstream 151797 23185615 ~ 23217196 (-)
XLOC_037809 ccnt2a coding upstream 200415 23234233 ~ 23242684 (-)
XLOC_037810 acmsd coding upstream 210474 23244292 ~ 23253870 (-)
XLOC_037770 NA non-coding downstream 1208587 21816200 ~ 21817737 (-)
XLOC_037767 CR392366.1 non-coding downstream 1593663 21432545 ~ 21432661 (-)
XLOC_037761 NA non-coding downstream 1820770 21194606 ~ 21205554 (-)
XLOC_037757 NA non-coding downstream 2221203 20802497 ~ 20805121 (-)
XLOC_037813 CR392363.2 non-coding upstream 349596 23383414 ~ 23388075 (-)
XLOC_037814 NA non-coding upstream 657440 23691258 ~ 23694572 (-)
XLOC_037815 NA non-coding upstream 663246 23697064 ~ 23700635 (-)
XLOC_037823 NA non-coding upstream 874265 23908083 ~ 23909865 (-)
XLOC_037824 CR545476.2 non-coding upstream 878073 23911891 ~ 23912005 (-)

Expression


Co-expression Network