G1876144


Basic Information

Item Value
gene id G1876144
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50323380 ~ 50334411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2146369
ACCAAAAAGGGGATGTCATGACAATGTTTATCACTGACAGTatgtaggtagaggtacatatttgtcccctgacagtaggtaggtagaggtacatatttatcactgacagcaggtaggtagaggtacatatttatcactgacagtatgtaggtagaggtatatatttgtcactgacagtatgtaggtagaggtacatatttatcactgacagtatgtaggtagaggtatatatttgtcactgacagtatgtaggtagaggtacataTTTATCAATGACAGCAGGTAGGTAGAGGTATATATTTGTCACTGACAGTatgtaggtagaggtacataTTTATCAATGACAGCAGGTAGGTAGAGGTACATATTTATCattgacagtaggtaggtagaggtacatatttatcactgTCAGTAGGAAGGTAGAGGTACATATGTATCACTGACAGCAGGTAGGCAGaggtacatatttatcactgacagtaggtaggcagagtacatatcactgacagtaggtaggtagagtacatatcactgacagtaggtaggcagagtacatatcactgacagtaggtaggtagagtacatatcactgacagtaggtagatagggaagtatcactgacagtaggtagggagagtacatatcactgacagtaggtaggtagagtacatatcactgacagtaggtaggtagagtacatatcactgacagtaggtaggcagagtacatatcactgacagtaggtaggtagagtacatatcactgacagtaggtaggtagagtacatatcactgacagtaggtagagctacgtatttatcactgacagtaggtaggcagagtacatatcactgacagtaggtagaactacatatttatcactgacagtaggtaggcagagtacatatcactgacagtaggtaggtagaggtacatattatatcactgacagtaggtaggcagagtacatatcactgacagtaggtagagtTACATAtgtatcactgacagtaggtaggtaggtagaggtacatATTATATCACTGACGGTAGGTAGGTAGAGATGCATATTTATCaatgacagtaggtaggtaggtagagatacatatttatcaatgacagtaggtaggtaggtagagatacATAT
>TU2146374
ggtaggcagagtacatatcactgacagtaggtagagctacatatttatcactgacagtaggtaggcagagtacatatcactgacagtaggtaggtagaggtacatATTATATCAcagacagtaggtaggcagagtacatatcactgacagtaggtagagctacatatttatcactgacagtaggtaggcagagtgcatatcactgacagtaggtagagcTACATATTTAtaactgacagtaggtaggcagagtacatatcactgacagtaggtagaactacatatttatcactgacagtaggtaggcagagtacatatcactgacagtaggtaggtagaggtacatattatatcactgacagtaggtaggcagagtacatatcactgacagtaggtagagtTACATAtgtatcactgacagtaggtaggtaggtagaggtacatATTATATCACTGACGGTAGGTAGGTAGAGATGCATATTTATCaatgacagtaggtaggtaggtagagatacatatttatcaatgacagtaggtaggtaggtggagatacatatttatcactgacagtagataggcagagtacatatcactgaaagtaggtaggtaggtaggtagagatacatatttatcactgacagtaggtaggcagagtacatatcactgacagaaGGTAGAgctacatatttatcactgacagtaggtaggtagagtacatatcaccgacagtaggtaggcagagtacatatcactgacagtagctaggtagaggtacatatttatcactgacagtaggtaggcagagtacatatcactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2146369 False 1149 lncRNA 0.40 5 50323380 50334411
TU2146374 True 817 lncRNA 0.40 3 50324973 50329310

Neighbor

gene id symbol gene type direction distance location
LOC110503026 LOC106610130 coding downstream 25588 50296650 ~ 50297792 (-)
LOC110503025 LOC106610281 coding downstream 69884 50212050 ~ 50253496 (-)
LOC118943861 NA coding downstream 129105 50191524 ~ 50194275 (-)
LOC110503023 LOC106610308 coding downstream 177071 50110420 ~ 50146309 (-)
LOC110502926 LOC106610323 coding downstream 221680 50077523 ~ 50101700 (-)
LOC110502946 LOC106610271 coding upstream 24872 50359283 ~ 50410527 (-)
LOC110502949 csnk1d coding upstream 161412 50495823 ~ 50513514 (-)
LOC110503027 LOC106610207 coding upstream 186503 50520914 ~ 50593400 (-)
dnai2b LOC106610195 coding upstream 260335 50594746 ~ 50610431 (-)
LOC110502951 LOC106610147 coding upstream 280618 50615029 ~ 50766231 (-)
G1876132 NA non-coding downstream 7282 50315874 ~ 50316098 (-)
G1876102 NA non-coding downstream 27835 50295103 ~ 50295545 (-)
G1876101 NA non-coding downstream 28739 50294291 ~ 50294641 (-)
G1876099 NA non-coding downstream 30021 50292681 ~ 50293359 (-)
G1876050 NA non-coding downstream 46550 50275721 ~ 50276830 (-)
G1876176 NA non-coding upstream 19716 50354127 ~ 50354474 (-)
G1876425 NA non-coding upstream 29945 50364356 ~ 50367289 (-)
G1876429 NA non-coding upstream 60060 50394471 ~ 50394824 (-)
G1876444 NA non-coding upstream 98790 50433201 ~ 50435068 (-)
G1876461 NA non-coding upstream 121359 50455770 ~ 50456624 (-)
G1875984 NA other downstream 270589 50051291 ~ 50052791 (-)
LOC110503141 LOC106610139 other downstream 477052 49732121 ~ 49855083 (-)
G1875310 NA other downstream 1016245 49304519 ~ 49307135 (-)
LOC110502911 LOC106609787 other downstream 1586098 48729606 ~ 48838648 (-)
G1876460 NA other upstream 120910 50455321 ~ 50455709 (-)
G1876522 NA other upstream 431619 50766030 ~ 50770317 (-)
G1877873 LOC106610563 other upstream 1423751 51758162 ~ 51765341 (-)
G1877882 NA other upstream 1458207 51792618 ~ 51792968 (-)
G1877986 NA other upstream 1580536 51914947 ~ 51915249 (-)

Expression


Co-expression Network