XLOC_037812 (sh3bp4)


Basic Information

Item Value
gene id XLOC_037812
gene name sh3bp4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23369294 ~ 23383131 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074230
ATGGCTGCTCATCGCATTAGATCAGCGAACAACAACACTGTGCTCCCTCGCTGCAGATCTGAAGGCGCACTAATCGATCTCAATGAAGGAGTTTCAGAGGCCACCCTCACAGATGTCAAAGTCCCTTCACCTAGTTCTTTACGACTGGATGCTACTGCCTCATTTGGAGCTGCCAGGGAAGTGATTGCCATTAAGGATTACTGCCCGTCCAGCTTTACCACACTTAAGTTCTCAAAAGGAGACTGTCTTTATGTCATAGACACATCAGGTGGAGAGTGGTGGTATGCACACAACAGCAAGGAGATGGGGTACATCCCAGCTGCTTATGTCCAGCCGATCAATTATCGGGACTCCTCGTTCAGTGACAGCGGCATGATTGACAGCATATGTGACATTTCTGAAGGAGTGAAAGAAATGGACATCTCAGGGGACTGGACGATGTCCTCCAAAACCACAGAATCTAGACATGAAAATCCTTTTGTTAATAAACGCATGTCAAATAACCCATTCCTAAACAGCACACTGCAAGACACCACTGACCAAAACAGCAACCAAAATTCAGCAAATACCTTTTGCTTTGATCATTTCTCACCTCCCATCTCAAACACCAGTAGCACTGTTAATATAAATGGCTTTGAAAATGGCCTGCTTGACACAAACAGTTTTAGCCTGAGCTCAGGTGTGAATCTTCGCCGAGACAATCCATTTTTTAAGAACAAGCGCTGCTACAGCATGTCAGAGCTGTCAGTCCTGCAGTCCCTGTCTGAAGGAAATCAAGGTTCCTTGAGTTATTTTGGCAGCATGAAGTCGCCTAAACCTGAGCATTTTCAAAGTAGAGAGGACTTCAAAACAGCATGGCTAAATCATCGTAAATTTACGAGATCCTGCCATGACCTGGACTCAATTGGACAAAACCCAGGATGGGGGCAAACCCAACCAATAGAGACCAACATAGTCTGCAAACTGGACAGCTCTGGTGGAGCTGTGCAGCTACCAAATACCAGTATCAGCATACATATCCCTGAGGGTCATGTTGCACCAGGAGAGACTCAACAGATATCTCTGAAGGCCCTTCTGGACCCACCGTTAGAGCTCAACAATGATAGATGCACTACTGTGAGTCCAGTGGTAGAAATAAAACTCAGTAACATGGAAACCAAGACCCCAGTCACTTTAGAGATGAAGGTGTCAGTTGTGGTAAAGATCGAGAGCCGCAGAACTGCAGAGGTAGTATGCATAAGAAGCGACTGCAAAGAAGGTCCGTACGTCCCAATACCACATGCATACATGTATGGGGACACTGTGCAAGTGACCCTGGACAATTTAGAGCCTTGCATGTATGTCTCTGTGGTGGCCCAGGCACAAACAGTGGCTCCTTACAACACAGTCTGGGAACATGTTGTAAAAAAGGTCACTCTTGGGGTGTATGGCCCAAAACACATCCACCCATCTTTCAAGACAGTGGTGGCCATTTTTGGTCATGACTGTGCCCCGAAGACATTGCTTGTAAGTGACGTCaaaaaacattcacagtcaaCTACACCTGTCGTCCTCCAGCTCTGGGGAAAGCACCAGTTTGTAATGGCAAAACCTCAAGATCTTCAGGTTGGCATGTATTCGAACATGTCCAATTTTGAAATAAGAGCCAATGAACAGGCCAAAACCGTGAGGGGGTTTCAAATCAAACTTGGCAAAGTGGCCCGCCTTGTCTACATGATCGCAGCCCGCGATTCTACAGACATTTCAGACTTTACACTGCGAATACAAGTCAAGGATGATAAAGACTGTATTCTGGCCCAATTTTGCGTTCAGACCCCAACCCCACTACCAAAAACAAGCACAAGGAGTTCTGTTCAAAGGCGCTTTCTAAAGAAAAAGGAAGTGAACAAAATAGTCCTCTCTCCTCTTGCAGCAACCACAAAGTATCCCCTATTTCAGGACAGATTAGTCAAAAACTTGAAATTTGCTAAATTGCTGAAAACAGTTGTAAGACAGTCCAAAAGCCTATATTTACTAGAGTATCTCAAAGGTGACGTAATGACTATTGTAAGCGAGGAAAAAATCAAACTGAAAGGACATCTATGGACAAAGGAATGGTATATCGGATACTACCATGGAAGAATTGGGTTGGTGCATGCAAAAAACATTCTTATCATGGGAAAAGTGAAACCTGTTAATTATAAAGGGTCAGATCTTACGACTACAGTGCTTTTAGAGCAGATCCTGAAGCCCTGCATGTGTCTGACGTACATCTATGCATCGGTTCGGACGATACTGATGGAAAATGTAGCAAGTTGGAGAGCATTTGCTGATGCTTTGGGCTTCGTCAATCTGCCATTGACACATTTCTGCCGGACAGAGCCAGACAGTGAGCCAGAAAAGGTAGCTTGTGTTCTTGAGAAGCTTAAGGAAGACTGCAATGCAGCTGAGGGCAAGGAGAGGAAGTCTTTCCAGAAGGAGCTCATGAAGGCTCTTCTGAAGATGGACTGTCAGGGTCTGGTGGCTAGGCTGGTCATGGACTTTGTGCTGTTGACCACTGCCGTGGAGGTGGCAGGTCGCTGGAGGGAGCTGGCAGAAAAGCTGGCTAAAGTTTCCCGGCAGCAGATGGAAGCATATGAAGCTCCACACAGAGACAGCAGAGGACAGCTGGACAGTGAGGCCATGTGGAAACCCGCATATGACTTCCTGGTGACATGGGCAGCACAGATCGGGGACAGCTACAGGGACGTGATTCAGGAGCTTCACACTGGACTGGACAAAATGAAGAACCCCATCACCAAACGCTGGAGACACATCACTGGCTCCCTCATTCTTGTCTACTGTCTGGATCTCCTGCGGAGCTCCGCCTTCAGCCCCTCCCCTCAGGATGACTGTGCCATATAA
>TCONS_00074231
AAGCTAAatcaaatattaaacattttacatgcTGCTAGAGAATGTCTGAAAACACAATTATAATGCAGAGCTTGgaaaatatgcataatatataAAACTGCATTTAATGGCATAATTTACCCAAAAACACATGCCTGCattactacactgtaaagaaaATCCTGCTCGCCTTaatattttaagctgaatcaaattaacctgaAAAGTCCATTAAACTTATATTACGTTAACCTAACCTAAAACAGCTTGCTTAACTTCTTAAACTAAGATAattatgttctaacttaattttataagttacattgaactaaaaacatatgttgtcatgtCATGTggatcatattttttttacagtgtataattatTTGACAAGTATCTTTTTTATATCTATACAATGTATGTCAAGGGTGCCTCACTAAATCATAAAAAACTCTAACATCTTTAATTATACTTGTAGTTATGAACATCGTGTTGTACCTTGTTGATCTTAAACTGTATGTGTGGTTTAGGCTCTTCTGAAGATGGACTGTCAGGGTCTGGTGGCTAGGCTGGTCATGGACTTTGTGCTGTTGACCACTGCCGTGGAGGTGGCAGGTCGCTGGAGGGAGCTGGCAGAAAAGCTGGCTAAAGTTTCCCGGCAGCAGATGGAAGCATATGAAGCTCCACACAGAGACAGCAGAGGACAGCTGGACAGTGAGGCCATGTGGAAACCCGCATATGACTTCCTGGTGACATGGGCAGCACAGATCGGGGACAGCTACAGGGACGTGATTCAGGAGCTTCACACTGGACTGG

Function

symbol description
sh3bp4 Predicted to act upstream of or within negative regulation of TOR signaling. Predicted to be located in clathrin-coated pit; clathrin-coated vesicle; and nucleus. Predicted to be active in cytoplasm. Orthologous to human SH3BP4 (SH3 domain binding protein 4).

GO:

id name namespace
GO:0032007 negative regulation of TOR signaling biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04131 Membrane trafficking
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-081104-509 Predicted to act upstream of or within negative regulation of TOR signaling. Predicted to be located in clathrin-coated pit; clathrin-coated vesicle; and nucleus. Predicted to be active in cytoplasm. Orthologous to human SH3BP4 (SH3 domain binding protein 4).

Ensembl:

ensembl_id ENSDARG00000030104

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074230 False 2883 mRNA 0.47 4 23369294 23383131
TCONS_00074231 True 795 lncRNA 0.38 2 23369422 23372729

Neighbor

gene id symbol gene type direction distance location
XLOC_037811 arl4cb coding downstream 10697 23356774 ~ 23358597 (-)
XLOC_037810 acmsd coding downstream 115424 23244292 ~ 23253870 (-)
XLOC_037809 ccnt2a coding downstream 126610 23234233 ~ 23242684 (-)
XLOC_037808 kif5c coding downstream 152098 23185615 ~ 23217196 (-)
XLOC_037807 lypd6b coding downstream 188232 23142170 ~ 23181062 (-)
XLOC_037813 CR392363.2 coding upstream 283 23383414 ~ 23388075 (-)
XLOC_037814 NA coding upstream 308127 23691258 ~ 23694572 (-)
XLOC_037815 NA coding upstream 313933 23697064 ~ 23700635 (-)
XLOC_037816 ndufa10 coding upstream 357375 23740506 ~ 23747409 (-)
XLOC_037817 parp9 coding upstream 371144 23754275 ~ 23765480 (-)
XLOC_037801 NA non-coding downstream 742533 22618456 ~ 22626761 (-)
XLOC_037770 NA non-coding downstream 1551557 21816200 ~ 21817737 (-)
XLOC_037767 CR392366.1 non-coding downstream 1936633 21432545 ~ 21432661 (-)
XLOC_037761 NA non-coding downstream 2163740 21194606 ~ 21205554 (-)
XLOC_037757 NA non-coding downstream 2564173 20802497 ~ 20805121 (-)
XLOC_037823 NA non-coding upstream 524952 23908083 ~ 23909865 (-)
XLOC_037824 CR545476.2 non-coding upstream 528760 23911891 ~ 23912005 (-)

Expression


Co-expression Network