G1877873 (LOC106610563)


Basic Information

Item Value
gene id G1877873
gene name LOC106610563
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 51758162 ~ 51765341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2148254
TTTCAAAAGAGGAGGACGTGTGAGGGAGGTAAATACACTGAACGAAAACATAAAcacaaaatgtaaagtgttggtcccatgtttcatgagctgaaacaaaagatcccagaaatgtggGATGgggtggtatatcaagaagcggattaaacagcctgatcaatacacagatgcaccttgtgctggggaaaattaAAGGCCACTGAAATGTGCACATAAtacaatgccacatatgtctcaagttttgaggaaccatgcaattagcatgctgactgcaggaatgttcaccagaactgttgccagataatttaatgttaatttgttTACCATAAGACATCTCccatgttgttttagagaattgggcagtatgtccaaccggcctcacaaccgcatacGGCGTTGTgtaggcgagcggtttgctgatgtcaacgttgtgaacacagttccccatggtggtggtggggttatggtatgggcaggcataagctacagttGAATTCATTTCATTTTAAATCGATGGAAATTTTAATGTACAGCGATACTGTGACGGCCCATACTGAGGCCcgtttttttttaaggtatctttgaCCTTCGCagtcatgaaatccatagattagtgcctaatgaatttatttcaactgactgatttcctcatgaactataactcagtgaaatctttgaaattgttgcatgttacatttatatttttgttcagtatatatatatatatacaggagaaagaaaaagaaaagtaGCACATACCTGGCATAAAAACTAGCCACAGAGTAGAAAAAAATGAAACACTCTCCAGCTGAACCTTTAAGCCAGTTCTTTTTCACAATCCCTTCCCCTTGTATGACTCTTTTCTCCCCCTCATACAtgcccccatccccatccccatcatgGATGGCACCATTAGTATTTATCTACTTCACTTCAGTAGCAAATAAAATGGGGGTGGACAGGTATGAGTGTTTTGATAGAAAATTAAAAGGTTGTTTATAAAGTGTCCCAGCATTGGTGAAGAACAGCTAAGCGATTGCAACAGTTTAACCCACTTTCCATAGACATATTCTACAACAATGGAACAAACAACTGAGTTTAAAACAATAAGAACATAACAAAGAAATCCTAAATTTGGCCCATTTACAAATGAACAGCGTGAGAGGCCTGAGATTTAAGTTCCCTGTACTGCTGTAGCCCGTAAATGTTTCCTTCAGACATCAAGACTCAATATGACATGTCAGAGGATGATTACATACATACTTGGCACATTTCCACCTGGTCATTTTAATCTCTGAACAGATCTCTCTTTAATACAGACATGTACACATGGAACTTACATAGCATGAACATTTGGGTGAGTGATGTCACATCCTGCCTGGCATTAGGTTCCTCCCCTGACCTAATACCGTTGGATAATGTGTTCCCCCCTCCAAACAACCAACCAACATCATAACAGGGAACAAAAACAGTGATCCCCAGTGTCACATATGGCACAAATGTAATTTTCTCTCACTCAAGCATAAAGTCAATAGATtatgacaactgggaactctgaggAAAAAACTAGGTCAAATCACAACATCAGTGATCTTCCGGTCAGAAAATAAAGTCAGTTTTGGAAAGATGCCCAAGTTTCCGacttggatgactgttcaaaatgaTTTTCCCAATCAGACTTAGTTCAGAGATTCCCAGTTGTTTGGgcattggtcaaaagtagtgcgctatatagggaatagggtgccatttgggatgcaaatacTGTCGGAGGAATCTAAAGGGAAAGGGAACAGGCGCGCCTGTCTTTTCCTTTCCCAAACATATGACTCATGAATGGATGAGTCGTTGGTTTGGTTACCGACCGATCAGCCAACTAAGTTCATGAATGACAGGGTGGAGGGAAGTCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGATAGGGAAGCCAGATGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGGGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGGGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGACAGGGTGGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGGGGGAAGCCAGAGGGTGTGCTGATTCAATCTACTCCTACAGTATGTTTATGAATGAGAGGGTGGAGGGAAGCCAGAGGGTGTGCTGATTTAATCTACTCCTACAATATGTTTATGAATGAGAGGGTGGGGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGAGGGAAGTCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGATAGGGAAGCCAGATGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGGGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGGGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGACAGGGTGGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGGGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGACAGGGTGGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGGGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGAGGGTGGAGGGAAGCCAGAGGGTGTGCTGATTTAATCTACTCCTACAATATGTTTATGAATGAGAGGGTGGGGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGATAGGGAAGCCAGATGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGGGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGGGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGACAGGGTGGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGGGGGAAGCCAGAGGGTGTGCTGATTTAATCTACTCCTACAATATGTTTATGAATGAGAGGGTGGGGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGAGGGTGGGGGGAAGCCATAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGAGGGTGGGGGGAAGCCAGAGGGTGCGCTGATTCAATCTGCTCCTACAGTATGTTTATAAATGAGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTATGTTTATGAATGAGAGGGAAGCCAGAGGGTGTGCTGATTCAATCTGCTCCTACAGTAGCCAGGTCTGCGTAGCAGAATGGCGAGAGGAGAGTAATATTGTCACTTATAACTAGTGTTCACCTATTACTGATACCCTCCTCCCTTcaaactcctctctttctcttgatCCTACAAGCCTGGGGTGTGTACGGGGGAAGAGATGACCACATAGATATGACAGTCTACTTTACGGTCACTTCTCTTGTTCACAACCACCATCTCTGCTCCTGTGAGTTATGTATTTGTTTCCATTGGTTTCTAAACATTTGTACAATAAAAGCACTACTGGTCATGAAAGCTTCTACAAAAAGGCCATTTATTTTCAAAATTTTCATTTTTTTGCTTTTAATAATAAGTCAAGttaatttaaaacatttacatgGAAACAAAACAAAGATTTGTTGTGTACAATAGTTAGTGTTTTAGGGAGTGAGCTGTTGCTACACCTTGGCAGTACTTGCAGGGGATATATGACTGAGTCCATTGATCTAAGCTAAAGTGCCATGGACTCACGGCCAAACCCAAACCTAGCCTAATCAACTCCAAAGCTAAGGCTTAAGCTGGCTCACTGAGTAGGCTAGTTTGTTAGGCTTTAGAACAACTAAAGATCACCAAAATCCAACCTTTAACTAAATTCCTCCAATCAACACGGTGACTTAAAACAGTGCACAATATGATCGACCCCTTATTAGAAGAAGTTATTAGGTAACAAACGAAACAAGCTAACTGATCATTTAGGACTTCAGAGTGTGTTGGCTGTATAGAGTATGTCTAGTGAAGAGTACAATAAAGCAGACTAATGGTTGGAATAATGAACAACCAAGTTGTGCCATTGATTAAGAACCTGAAGACCAACTTATCAATTCTGTATGTAGTAAACATAGGAGAAGCCACCTTTATTTACCCTTTGAACATTAACAAAACCAATATTTTAACTGCAGCTCACctcactcaacacacacatacacatacaatcCAGTCAATGCCCCAAAGAATGCTGGGATACATTTAACTTCCTTTCTCCAAAGCAGTATGGGAAATATACAGTTCAGGCCGTGACCTCACATGACTCTACACCCCACGCATTACACCTAAACCTGGGTGATCAACAGTTCATGCTTCGACCTCTGTGACCTCTGTCAATCTCCATATGTCCGCTTTAAAAGAATGTGACAATCAGTGTCATGACCGCTGGTTGGTTTTCCCTTACCTAATAATGTGCAATAAGGAATATGCTAGTACTGTAAACAGGACTGTAGCTATGGTAACCATGAAGGGAAATCCTCTGAATGGAAAGACAATGGTGGCGTGGGTGGGATATGGTTCATGTTGAATATGAGTGGATATAAGGGTTGATCCCCTTATAAGGAGAAACACACTTTAATGACATATTGGAACTGTGGGATTAGATCATCATAATGACAGATCACAGTTCTACAAAAAAGAATCCCTCAAACCAATAACTGGTGTCTCagagttacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagttagtGGTCGACACGGAATTCTGTAATGGGCTGGAGGAATGGACTCATGGGACAGGCATTTTCGTTTCCATTAAcagttggacacacacacacacacacaggagtaaaTAAGGCTAAATAACAGATGGTGTATGGGTATTCCTGATCCAGGAGGTATAGCAGAACAGGATGTCCCCATATAGAAGTTCTCAGGATAGATCCATATGTGGGGATTTTTCCAGTCTTTATCGTGCTCCCAACCCCTCCCAGACTTATTATAGCATTAAACTCATGAAAAAGAATTGTCTCCTTCGGGGACCTCACAAACCACATTCTGGTGTCCTTATTAACCACGTTCTGTGGTGGTGACATTACAGCGCTGTTCTGTTTTACACCCTGATCTCATCATCATCCTCGTCCATGAAGGAGAAGTCTTTATCGTCCTCCCCTCCAGCCCCCCGAGAGCTGTACTTGGCGCTGTCCGTGTCCCCCTCCTGCAGGTGGTGGAGTGGTTTCTCCTCAAGAGCGGCAGAGCCGGAGGAGGACACGGaacagctgtccaggtggctgtgGTAGTTCCTGCGAGGGGTGTAGAGGGGGTCGGCCATGACCTTCGGCTGAGGATAGGTGCGTGGGGGCCTGACTGGAGCCTGTAGATCCACCTGGTCCTCGATCTCATCCTCCGTGGTGGGAGGGCTAAAGGGGGGTGACCCGCGGCCCTCACTGCCCTTCCCCTCCTCGTACCCCAGGTCGTCTTCCTCCCAGCCCTTCTTTTCCATGACGCTGAGGATGTCCCCCAGCATGGAGGGTCCCAGGTCAATGTGAAATGACATGATGGACTCCGCGTGCTTCATCCCACCACCCCGATGATGTGATGGGGGCAGGTCAGTCAGTTCTCCAAAGTTACGCTCGTCAAACTCCAGATCCAGCATCGCCATGGCCGAGGCACCGTTGACTGGTTTGCTGATTCCATCGACCTCGGGCAGCTTCTTCAGAGGGCTGGAGGAGACGCTCTTGGGCATCTGCTGACCACCGCCCATCCTGACCACGTCCTCGTCATTGAGGTAGGGCAGGGAGATGGCGTTCTTCACAAAGTTTGGCGAGCCACCGGGGGGCGCCAACGAGTTGTTCTTGTACATGTCACCGCGGTTCACCGACTGGGAGCGCTTGCTGCTCCTGAAGGTTCGGGACAGCAGGCCTGGTTTGTGTCCAGGGGAGCTCTGCTGGACCTCTGGAACCTGTTCTTTAGGGGGCTCCCCAGACCGGGTACTTAGGAAAGAGGTGTCCCCGAAGGCGTCCCCGCCACGACCCACATGCATGGTGTGTCTGAAGTCCCCCAGAGGGGCGCTGATCATCTCCGCAGTCAGGTCGGCCCGGGAGCGACGCTTGGACTGGTTCGAGGTTAGCTGCTTGAGAATAGGCATGGTGATGTCTGATGAAGTCTGATTTAATACGCAACAAGACCAGAAACACCTGATTGGTGCTGAGAGTTATGTGATGGTTGTGTCTTTCTCACATTTAATTGTAAACTGTGTTGTCAAGGCAAGGTTTGAACCAGGTCTCTAGAGTACCCAGCCATTGTGGTCCTTCAAACAGCTACGGTGAGTTCT

Function

NR:

description
cdc42 effector protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2148254 True 7066 TUCP 0.45 2 51758162 51765341

Neighbor

gene id symbol gene type direction distance location
LOC110502952 NA coding downstream 987827 50766291 ~ 50770335 (-)
LOC110502951 LOC106610147 coding downstream 991931 50615029 ~ 50766231 (-)
dnai2b LOC106610195 coding downstream 1147731 50594746 ~ 50610431 (-)
LOC110503027 LOC106610207 coding downstream 1164762 50520914 ~ 50593400 (-)
LOC110502949 csnk1d coding downstream 1244648 50495823 ~ 50513514 (-)
LOC110502956 LOC106610551 coding upstream 37205 51802546 ~ 51813619 (-)
LOC110503030 tekt3 coding upstream 63202 51828543 ~ 51842849 (-)
LOC118943832 NA coding upstream 180097 51945438 ~ 51953168 (-)
LOC110502957 LOC106610540 coding upstream 506064 52271405 ~ 52315778 (-)
trnag-ccc-6 NA coding upstream 1001508 52766849 ~ 52766919 (-)
G1877770 NA non-coding downstream 47473 51710349 ~ 51710689 (-)
G1877761 NA non-coding downstream 66427 51691496 ~ 51691735 (-)
G1877706 NA non-coding downstream 148073 51609115 ~ 51610089 (-)
G1877623 NA non-coding downstream 301165 51456716 ~ 51456997 (-)
G1877622 NA non-coding downstream 304487 51450640 ~ 51453675 (-)
G1877938 NA non-coding upstream 102626 51867967 ~ 51868421 (-)
G1877950 NA non-coding upstream 112646 51877987 ~ 51878195 (-)
G1877977 NA non-coding upstream 143663 51909004 ~ 51909205 (-)
G1878008 NA non-coding upstream 163031 51928372 ~ 51928620 (-)
G1878100 NA non-coding upstream 233825 51999166 ~ 52026414 (-)
G1876522 NA other downstream 987845 50766030 ~ 50770317 (-)
G1876460 NA other downstream 1302453 50455321 ~ 50455709 (-)
LOC110503025 LOC106610281 other downstream 1543658 50212050 ~ 50253496 (-)
G1875984 NA other downstream 1705371 50051291 ~ 50052791 (-)
LOC110503141 LOC106610139 other downstream 1911834 49732121 ~ 49855083 (-)
G1877882 NA other upstream 27277 51792618 ~ 51792968 (-)
G1877986 NA other upstream 149606 51914947 ~ 51915249 (-)
G1878014 NA other upstream 169383 51934724 ~ 51935044 (-)
G1878101 NA other upstream 271255 52036596 ~ 52037750 (-)
G1878324 NA other upstream 442087 52207428 ~ 52207627 (-)

Expression


Co-expression Network