XLOC_037818 (esyt3)


Basic Information

Item Value
gene id XLOC_037818
gene name esyt3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23783856 ~ 23807032 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074237
GGGAAACACGGAAGTTTACAGAAACTGACACAATCACGACGGCTTAGCGGAGAAGTAAACGCAGTGATGGGTGAGGTGATGCTGTGCACGGCTCGGTAAAGGATTGGTCTGCCGTGTCGATCTGATGGTTTGTACTGTATCAGGTAGTCTGGAGAAGCAACCGATCAGCCAAGCCATCGCCAGGCGATCTCTAACGACACATTAATTAGAACGCTTTAACTTTTTACTACTTGAGAAGTTTGAGTCAGACTTTGTAATCAGAATGAGTAACGGGGTCAACGAGCCCCCTCTCTCCACCGAACAACCGGAGGGACTCAAGCCGAAGGATGTCAGTCAGATGATCCTGGAGTTCCTGATGTTCATGATGAGGGCGATAGCCATCTGCTACCCCGTGTATTTGACGGGCACATTTGGACTAAGCGTCAGCTGGATTCTTCTGAGCATGTTTATGTGGACCATGTGGAAAAACAACCGCAGGTGGAAAGAGCAGAGAATCGACACAGCCATTGACTTTTTAGAAAATGAGAAGGACGTGATCAGTACTGAACTCAAAGCCATGGACATGCCACCTTGGATTCATTTTGCAGATGTTGAGAAGGCTGCGTGGATCAACAAGATTCTTCAGCAGTCATGGCCGTTCTTCGGAGTGTACATGGAGAAACTACTCATTGAAAACATCCAGACAGTGGTCAGATCAGTCCACCCTCATCTAAAGACTTTCACCTTTACTAAAGTTCACATGGGACAGAAGGCTCCAACTATTACTGGCATTCGGGCGTATACAGATGAGCTGGAAACAAGAGAAGTCATTCTTGATCTCAACATTGTTTACGAGGCTGATGTGGACATTGATGCTGATGTAAACCGAGCCATTAAAGTAGGAATCAAAGGGCTTCAGCTTCAGGGGATGCTGCGTGTAATTCTAGAACCTCTGATTGGCCAGGCACCCCTTGTAGGTGGAGTCACTATGTTTTTCATTCGTCGACCTGCTCTGCAAATCAATTGGACTGGAGTGACAAACGTTTTGGATGGTCCAGGTTTAAGTCATTTGTCAGAATCAGCCATTGTGGACGTCATCGCCTCTCTCATGGTTCTGCCCAATCGCATGTGCTTCCCTTTAATTGATCAAGTCAAGGTTGAACAAATGAGGTTTCCTCTTCCTCGAGGTGTTGTACGCGTCCATGTTCTGGAAGCCCGCGATCTTGTAGCAAAGGACTCACACATGATGGGACTAGTAAAGGGCAAGTCAGATCCATATACTGTGCTGAGAGTTGGAAACaagcatttcaaaacaaagaCCATCAAAGAAACTCTGAATCCACGCTGGAATGAAGTTTATGAGTTTGTCATTCATGAAGCCCCGGGGCAGGAGTTGGAGGTGGAACTCTACGATGAAGACAAAGACGCTGATGACTTTTTGGGCAGGTTCAGTATGGATTGTGGGGATGTGAGAAAAGACCGAGAGATAGATAAGTGGTACACTCTGGAGGACATTGAGAGTGGTCAGATACATTTTAAACTGCAGTGGTTTTCTTTGTGCTCAAACCCAGAACTGCTGAAGGAGACCAGTGATGGGCTTGCTTGTGCTATGCTGGCATTGTATCTAGACTGTGCATCTAATCTGCCTAAAGATCAACGTGAAGTCACCCATAATGAAAAACATGGAAAACAACCTAAAGAGTCTCGGGTCACtagaaaaacaaataatcccaACTCCTATGTGGAGTTTTCCATTGATCTGCAAAGTCAGAAAAGCAAGGTTGTGTTTGCCTCAAAAGACCCGATTTTTGATGAATGCTTCACATTCTTTGTGCACAGTGTTAAAAACCAAGTGTTAAATGTTGAGGTAAAGGAACATGAGAAGAAATCCTCACTGGGCAAATTCAGTCTGCCGTTGGTGCGGCTGCTCAATGTTTCTGACATGACTTTGGACCAGCGCTTTCAGCTGGAGCGCTCCGCACCCAATAGCCAGGTCAAGTTGAAAGCTGTTCTTAGGATTCTTACATTAGAGAAACAACAACCAAAGGTTGTCACTTCAGCACCTCAGGATAAAAATACATCAACCCCAAATCGTCCTGAGCCACGTACTCCAAATCCAACTTCAAATCCAGTTCCAAATCCAGCTCCACCTCCGGCTGCAGCTCAGCTAGTACAGAGCAACCCAAAAGAAAAAGGGCCCATTTCATCAGTCCCGCTCTCTAAAACCCAAGTTCCATTTTCAGTTGTGCCCTTAAATGATCTTCAAGCAGAGTATCCTCCCTACAGACGAAGCACTTTTGTGGGCTCAGAGGGGCTGCAATCGACCCCTTCCACCCCCGGTCCAATGCGACGCTATGATTCCCACAGCCTTTTGTCTGAGAACTCGATTGCTTCTTCACGCGTTGATCTCACAGACAGTTACCCTTACCCAGAGGCCATCATGAATCATCAGGGCACCTTTGGACAGATCCAGATTACATTGCGTTATGCCACCTTAAGAAAGCGGCTTATTGTGATAGTCAACTGCTGCAACAATCTGTTTTCCTCCAATGAGAGTGGCTCTGATACTTACGTTCGCATGTATCTGCTGCCTGACCAGACGTGGAAACACCGAAAGCGCACCGCTGTTAAAAAGAAGACTGTGAATCCTGTCTTTGATGAAACTTTTGAGTTTGCAGTGTCACTGGAGGAAGCAAGAAACAGAAAGTTGGACGTTGctgtaaaaaacaataaaatgcttcATAAGAGAGAGCGAAAAGAGATTGGAATGGTTTTGATTGATATGTCTGAAATAGATCTGACGAAGGGCTCAACAGAATGGTATGAACTCACTCTCCCGGGGCTAAAGAAGACAAACTGGCAAAGCTGAGGTCCACTAGTCTGGGATCAATATAACTGAGATTTTTAGATGTTACTGATAAAATACTGTCATTGATTTTGATTTGAATTCACAATTCCTAGTTTAACATGATATTTccttttcatttttgtttcataCTGTGCCAAACTATAGGTTTCTATTCTGTATGAAGTTGCGGTCTTATGTGTGTG
>TCONS_00074238
TCTGCTACCCCGTGTATTTGACGGGCACATTTGGACTAAGCGTCAGCTGGATTCTTCTGAGCATGTTTATGTGGACCATGTGGAAAAACAACCGCAGGTGGAAAGAGCAGAGAATCGACACAGCCATTGACTTTTTAGAAAATGAGAAGGACGTGATCAGTACTGAACTCAAAGCCATGGACATGCCACCTTGGATTCATTTTGCAGATGTTGAGAAGGCTGCGTGGATCAACAAGATTCTTCAGCAGTCATGGCCGTTCTTCGGAGTGTACATGGAGAAACTACTCATTGAAAACATCCAGACAGTGGTCAGATCAGTCCACCCTCATCTAAAGACTTTCACCTTTACTAAAGTTCACATGGGACAGAAGGCTCCAACTATTACTGGCATTCGGGCGTATACAGATGAGCTGGAAACAAGAGAAGTCATTCTTGATCTCAACATTGTGTGAGCTATAGCATTAAACATTGGTCTGATACTAGATTACCATACACTGATAAAAAATTTCTGCttcttttacttaaaaaagtagtgatttttTTGTGCATAGCTTTATTATATAGATGTAACAATACTAGGCCTTGTATCTACATAACCTAAT

Function

symbol description
esyt3 Predicted to enable calcium ion binding activity and phospholipid binding activity. Predicted to act upstream of or within endoplasmic reticulum-plasma membrane tethering and lipid transport. Predicted to be located in endoplasmic reticulum and plasma membrane. Predicted to be integral component of membrane. Predicted to be extrinsic component of cytoplasmic side of plasma membrane and intrinsic component of endoplasmic reticulum membrane. Orthologous to human ESYT3 (extended synaptotagmin 3).

GO:

id name namespace
GO:0061817 endoplasmic reticulum-plasma membrane tethering biological_process
GO:0006869 lipid transport biological_process
GO:0031227 intrinsic component of endoplasmic reticulum membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008429 phosphatidylethanolamine binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0008289 lipid binding molecular_function
GO:0031210 phosphatidylcholine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050809-35 Predicted to enable calcium ion binding activity and phospholipid binding activity. Predicted to act upstream of or within endoplasmic reticulum-plasma membrane tethering and lipid transport. Predicted to be located in endoplasmic reticulum and plasma membrane. Predicted to be integral component of membrane. Predicted to be extrinsic component of cytoplasmic side of plasma membrane and intrinsic component of endoplasmic reticulum membrane. Orthologous to human ESYT3 (extended synaptotagmin 3).

Ensembl:

ensembl_id ENSDARG00000006422

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074237 False 3030 mRNA 0.45 23 23783856 23807032
TCONS_00074238 True 602 lncRNA 0.41 4 23804203 23806652

Neighbor

gene id symbol gene type direction distance location
XLOC_037817 parp9 coding downstream 18376 23754275 ~ 23765480 (-)
XLOC_037816 ndufa10 coding downstream 36447 23740506 ~ 23747409 (-)
XLOC_037815 NA coding downstream 83221 23697064 ~ 23700635 (-)
XLOC_037814 NA coding downstream 89284 23691258 ~ 23694572 (-)
XLOC_037813 CR392363.2 coding downstream 395781 23383414 ~ 23388075 (-)
XLOC_037819 wdfy2 coding upstream 6561 23813593 ~ 23824290 (-)
XLOC_037820 serpine3 coding upstream 35852 23842884 ~ 23850978 (-)
XLOC_037821 si:dkeyp-74a11.1 coding upstream 52285 23859317 ~ 23885220 (-)
XLOC_037822 asb18 coding upstream 78409 23885441 ~ 23894392 (-)
XLOC_037823 NA coding upstream 101051 23908083 ~ 23909865 (-)
XLOC_037801 NA non-coding downstream 1157095 22618456 ~ 22626761 (-)
XLOC_037770 NA non-coding downstream 1966119 21816200 ~ 21817737 (-)
XLOC_037824 CR545476.2 non-coding upstream 104859 23911891 ~ 23912005 (-)
XLOC_037827 NA non-coding upstream 226720 24033752 ~ 24035345 (-)
XLOC_037830 NA non-coding upstream 362583 24169615 ~ 24186056 (-)
XLOC_037835 CR538727.1 non-coding upstream 528131 24335163 ~ 24335279 (-)

Expression


Co-expression Network