G1878552


Basic Information

Item Value
gene id G1878552
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 52257961 ~ 52258840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2148981
GCCACTTTCCAGAGCTTAGACGTTGCTGACGACTGACAGATCTtacaatgcctggataggtatttgaAGTATTAGCTTACCAAGCTCTGAtgaaggccttgaggccgatacgtaaagcttcaTAAAGAGCAGtcatactagcaagagcagtgggcaggtttcttctttctttctcatcTTAATCTACTGTTAACGTGCACCTGCAacaagatagctcagatgtgctaGTGCCTTTTGAATtaagtatcagctaaccacatcaaaTGTTATAtcaatctgtcagtcgatgacacagtCGAGGACGTGGCACTCAACCATTAGTTAACGCATGCAACAACTGAGCAGGGGAACGCAGCCTTTGTCTGCTTATTGCCCCTTCCCGCGGAGGGGGTGCCTCAGAGGGAAACATCTCACAGGCAAACAGAAAAAAATTGTTGGGGTGTGATAAAATAATGTATATGCTTAAAGATAATGATTAAATAATTCCACTCTGAAACCATATATTTGTATGAAATGTATTAGAATCATAAAACTataatctgatgatgtgtgtagttttagtcagaattagaacaaggaactttgttcctttttagtatgtaagcaggatgcaagtgtgaaacaaatgataagaggagctatcgacagacaagctggactactgtgttccttacaggacattctgtctccACCCGTGGAGGGGAGACACTGTTAGGCTTGcagaaaattatgaaacatgttGCAGATTAAACAATGTATCTGTGTAGTGGAAAAACACtgactgtctgagcaaggcgtaGTTTAAGATTtgaacttgtttgtgtgtgttataaagACTGGGTTTGCATTTTTGATGTTAGAACGTTCTCGTGaataaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2148981 True 880 lncRNA 0.40 1 52257961 52258840

Neighbor

gene id symbol gene type direction distance location
LOC118943832 NA coding downstream 304793 51945438 ~ 51953168 (-)
LOC110503030 tekt3 coding downstream 415112 51828543 ~ 51842849 (-)
LOC110502956 LOC106610551 coding downstream 444342 51802546 ~ 51813619 (-)
LOC110502952 NA coding downstream 1487626 50766291 ~ 50770335 (-)
LOC110502951 LOC106610147 coding downstream 1491730 50615029 ~ 50766231 (-)
LOC110502957 LOC106610540 coding upstream 12565 52271405 ~ 52315778 (-)
trnag-ccc-6 NA coding upstream 508009 52766849 ~ 52766919 (-)
LOC110503032 LOC106610511 coding upstream 516311 52774656 ~ 52816006 (-)
LOC110503033 LOC106589632 coding upstream 566653 52825493 ~ 52860654 (-)
LOC110502960 lsm12 coding upstream 732624 52991464 ~ 53012988 (-)
G1878546 NA non-coding downstream 7554 52245602 ~ 52250407 (-)
G1878541 NA non-coding downstream 17412 52240154 ~ 52240549 (-)
G1878540 NA non-coding downstream 19306 52238327 ~ 52238655 (-)
G1878539 NA non-coding downstream 20841 52236604 ~ 52237120 (-)
G1878340 NA non-coding downstream 40251 52217386 ~ 52217710 (-)
G1878554 NA non-coding upstream 1601 52260441 ~ 52261201 (-)
G1878529 NA non-coding upstream 31943 52290783 ~ 52297189 (-)
G1878584 NA non-coding upstream 89687 52348527 ~ 52348775 (-)
G1878589 NA non-coding upstream 98498 52357338 ~ 52357647 (-)
G1878595 NA non-coding upstream 118154 52376994 ~ 52377200 (-)
G1878324 NA other downstream 50334 52207428 ~ 52207627 (-)
G1878101 NA other downstream 220211 52036596 ~ 52037750 (-)
G1878014 NA other downstream 322917 51934724 ~ 51935044 (-)
G1877986 NA other downstream 342712 51914947 ~ 51915249 (-)
G1877882 NA other downstream 464993 51792618 ~ 51792968 (-)
G1878770 NA other upstream 384248 52643088 ~ 52643509 (-)
G1879406 NA other upstream 904402 53163242 ~ 53164351 (-)
LOC110503036 LOC106610742 other upstream 1808947 54039018 ~ 54073953 (-)
G1880780 NA other upstream 1985942 54244782 ~ 54246686 (-)

Expression


Co-expression Network