G1879605


Basic Information

Item Value
gene id G1879605
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53402429 ~ 53403165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2150127
ttagcgttctctcaaccagcttcatgaggtaatcactgAATCATCATGCGTttaaatgaacaggtgtgccttgttaaaagttaatttgtggaatgtctttccttcttaatgcgtttgagccaatcagttgtgttgtgacaacgtaGGCggggtatacagaaaatagccctatttggtaaaagaccaagtccatgttattgctagaacagctcaaataagcaaagagaaatgacagtccatcattactttaagacatgaaggtcagtcaatacagaacatttcaagaacttttgaaagtttcatcaagtgcagtcgcaaaaaccatcaagcgctatgatgaaactgtctctcatgaggaccgccacaggacaggaagacccagagctacctctgctgcagaggataagttcattagttaccagcttcagaaattgcagtccaaataaatgcttcacagagttcaagtaacagacacagctcaacattaactgttcggaggagactgtgtgaatcaggccctcatggtcgaattgctgcaaagaaaccactactaaaggacaccaataataagaaaagacttgcttgggctaagaaacacaagcaatggacattagactggtggaaatttgtcctttggtctggggtccaaatttgatatttttggttccaaccgccgtgtctttgtgagatgcaatgtgggtgaacggatgatctcagcatacagtggggcaaaaaag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2150127 True 737 lncRNA 0.42 1 53402429 53403165
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118943904 NA coding upstream 2132 53398184 ~ 53400297 (+)
LOC110502959 LOC106610521 coding upstream 628937 52767090 ~ 52773492 (+)
LOC110502958 LOC106610530 coding upstream 814541 52525574 ~ 52587888 (+)
LOC110503031 LOC106583559 coding upstream 1426318 51956172 ~ 52016294 (+)
LOC110502954 LOC106610563 coding upstream 1641476 51725830 ~ 51760953 (+)
LOC110502965 dll1 coding downstream 248146 53651311 ~ 53657432 (+)
LOC110502967 psmb1 coding downstream 348201 53751366 ~ 53753611 (+)
tbp tbp coding downstream 368190 53771355 ~ 53780114 (+)
LOC110502970 LOC106610710 coding downstream 380915 53784080 ~ 53792095 (+)
LOC110502971 LOC106610715 coding downstream 426126 53829291 ~ 53840691 (+)
G1879599 NA non-coding upstream 11313 53390900 ~ 53391116 (+)
G1879590 NA non-coding upstream 19973 53382110 ~ 53382456 (+)
G1879588 NA non-coding upstream 21785 53380411 ~ 53380644 (+)
G1879559 NA non-coding upstream 41805 53360413 ~ 53360624 (+)
G1879608 NA non-coding downstream 762 53403927 ~ 53404280 (+)
G1879654 NA non-coding downstream 40120 53443285 ~ 53443598 (+)
G1879686 NA non-coding downstream 83287 53486452 ~ 53492000 (+)
G1879688 NA non-coding downstream 84226 53487391 ~ 53487918 (+)
G1879829 NA non-coding downstream 198531 53601696 ~ 53601899 (+)
G1879582 NA other upstream 24243 53377810 ~ 53378186 (+)
G1878894 LOC106610502 other upstream 541794 52857868 ~ 52860635 (+)
G1878893 NA other upstream 565795 52825488 ~ 52836634 (+)
G1878346 LOC100136012 other upstream 1176240 52225820 ~ 52226189 (+)
G1879958 NA other downstream 448506 53851671 ~ 53855730 (+)
G1881371 NA other downstream 1599617 55002782 ~ 55003672 (+)
G1882830 NA other downstream 3126630 56529795 ~ 56538483 (+)
G1882831 NA other downstream 3130452 56533617 ~ 56543256 (+)
LOC110503001 LOC106611028 other downstream 3270083 56613066 ~ 56727194 (+)

Expression

G1879605 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G1879605 Expression in each Bioproject

Bar chart with 21 bars.
G1879605 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network