G1880495


Basic Information

Item Value
gene id G1880495
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53790242 ~ 53792067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2151174
GCTCACAAACTCCGAAAACCATcatatacaaaataataaaagtgggttcaaaacccgtcgcacaccagaacataacttgcacataacatacaatcaaacaatcacccacaagaacatgaggggaaacagagggttaaatacacaacatgtaattgatgggattggaaccaggtgtgatggaagacaagacaaaaccaatggaaaatgaaaaatggatcagcgatggcttgaaggtcggtgacgtcgaccaccgaacgccgtccgaacaaggagagggactgacttcggcggaagtcgtgacaagacCAGTGTAATTagaatgaatggcagtagaggcataGGAGATGCATGTATCAGAAATAGAATTATAATCAACAAAAAATATTGTCACATAATTATAAATAGAGTTTATACAGGTTTTATACCAACTTTCtgtataaatagcctctaaaatatatgtaaactGACCATAAATGTCTCGGATGTTATTTTCTTGGAAAATTGTGAGTGCTTTTATGATGCAGTATCAGTAgttgttgcatttacaacttgtctcaGTCCTATCATCGATTGATTTCGGCCAGTGTACGGCTGTGGtttgactgcattgtttgaatggaatgttggcatattggcatTTAATTTGAACAATTAATGGAAGAATTCCTCTaaaactggctggctagctagctaactaacacacagtgcagataaattctacacattcattgtttcacaccatatcttatcacagcactgtCAAACCATagttgaccaactccctgaccaaaatggctgacctttgGACCATCTTAAGAATGTTCATGTCCATtttagtattctaattcctaattctatggttaTCATTTTGAAATTCTAATAACCTCAACTCTATAGGTTAAATCAGAACACTGCATTGACAGAGGTAGACATCCCATGCCACAGTGATAGGAAAATAGGTATTGACAACTTTTTTTCAACATAATAAAAGATTATGGTATTGTTAAGCTTGCTTGGGACAATTAACATACTCTTTCCAGTGTATTAGTTTCAGAAAGATATTGAATAATTTGCTCAGTCATTAATAACTACCTTACTCTGCTAGCTGTAAAGAGTTAACATTGACTCAGCTGCAGTCAGCCCTGTACAGAGTAAGGTAGTTAAGAGTTAACGTTGACTCAGCTGCAGTCAGCCCTGTACAGAGTAAGGTAGTTAAGAGTTAACGTTGACTCAGCTGCAGTCAGCCCTGTACAGAGTAAGGTAGTTAAGAGTTAACGTTGACTCAGCTGCAGTCAGCCCTGTACAGAGTAAGGTGTTTGTTTGAAACTCCTCAGGTGGTGCTATGTTGAAGTGAACCAAAGGTCAACAAGTCTAGTTAGAATTCCAGCACATAGCTAGAGACTGTGACCCTCATATGAGCTTAGACAGAACCCATGTCCTAATGTAAACAACAGTTAGAAATTCTGAAAAACTATTTTTGAAAACAAAAATTAGGTTTCTGAGTGGTTTGTACATTAGACAACAAGCCAAATGAGGCTCTCCAATATGGGCTGGAAGAACAAGCATTCAAATAATGAACGTTACACAGTACTCTCCTCGCATTATCTGATTACTGCAcagattgtttttatttttaccatAGACACAGCTAAATCAAAGAGATGGTAAATCCCACATCGGAAAGTTGACTCAATCTCATATGCTAAATGAATCTgagtttacatactgtacacttACCATGGGAAAGGTCAGAGTAAACCAGGTTAATAAAACA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2151174 True 1774 lncRNA 0.38 2 53790242 53792067

Neighbor

gene id symbol gene type direction distance location
pdcd2 pdcd2 coding downstream 6160 53779267 ~ 53784082 (-)
LOC110502966 phf10 coding downstream 55622 53716988 ~ 53734620 (-)
LOC110502964 LOC106610676 coding downstream 218761 53565101 ~ 53571481 (-)
LOC110502963 LOC106610657 coding downstream 228208 53517983 ~ 53562034 (-)
LOC110502962 LOC106610650 coding downstream 275650 53506093 ~ 53514592 (-)
ccsapb LOC106610728 coding upstream 56560 53848627 ~ 53851652 (-)
LOC100135949 actc1 coding upstream 59852 53851919 ~ 53855036 (-)
LOC110502973 abcb10 coding upstream 66652 53858719 ~ 53864562 (-)
LOC110503036 LOC106610742 coding upstream 246951 54039018 ~ 54073953 (-)
LOC110503071 NA coding upstream 421190 54213257 ~ 54217097 (-)
G1880489 NA non-coding downstream 19818 53770185 ~ 53770424 (-)
G1880488 NA non-coding downstream 20355 53769688 ~ 53769887 (-)
G1880487 NA non-coding downstream 20583 53769050 ~ 53769659 (-)
G1880485 NA non-coding downstream 23054 53766988 ~ 53767188 (-)
G1880479 NA non-coding downstream 33226 53756719 ~ 53757016 (-)
G1880499 NA non-coding upstream 1521 53793588 ~ 53794153 (-)
G1880500 NA non-coding upstream 3153 53795220 ~ 53795432 (-)
G1880501 NA non-coding upstream 3503 53795570 ~ 53795856 (-)
G1880506 NA non-coding upstream 10181 53802248 ~ 53804847 (-)
G1880514 NA non-coding upstream 22139 53814206 ~ 53814426 (-)
G1879406 NA other downstream 625891 53163242 ~ 53164351 (-)
G1878770 NA other downstream 1146733 52643088 ~ 52643509 (-)
LOC110502957 LOC106610540 other downstream 1474464 52271405 ~ 52315778 (-)
G1878324 NA other downstream 1582615 52207428 ~ 52207627 (-)
G1878101 NA other downstream 1752492 52036596 ~ 52037750 (-)
G1880780 NA other upstream 452715 54244782 ~ 54246686 (-)
G1881414 NA other upstream 1210699 55002766 ~ 55003624 (-)
G1883219 NA other upstream 2813939 56606006 ~ 56610640 (-)
G1883244 NA other upstream 2851940 56644007 ~ 56709888 (-)

Expression


Co-expression Network