G1879958


Basic Information

Item Value
gene id G1879958
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53851671 ~ 53855730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2150531
GTTTGCATTAAGTTTTATCGCGTGCGTAAACGTCCGAATGTGTGACATTTGATAACAATTAATGTGGTTGACCTTGGTATTTCCAATAGCCTATTATCTCACAGTGCCATTGCATTCAGAATGAAAATCCTAAATTTGCCATGCAGTCTACCTGTGCATGTGCACGAGTAGCCAAGCCTATTGGTTCATTGCATGATGATCATGGTATGTCTTTTCTAACATAGGCTGTTCATTACAAAACagaaatgtatgaaaataccAAATAATGGACTTTAATAACTTAGTATTTATGTACATTCACGTTCACATGTTGAATAATAACATGGCATGTTTCGTTCTTGTTGATGTTGGTTGACATTTGCAGATTTTCTCCCCAGGTAACATGGTTACAAAATAAAAGCGTGGCAAAAAAAGTCCAGTAACAACATGTTGTTTCTCTTCGCGATCCAGAGAAAGCAGACACTGGAGACGATGATAGGTTTAGAAGCACTTGCGGTGGACAATGCTGGGGCCTGCCTCGTCGTATTCCTGCTTGGTGATCCACATGGCCTGGAAAGTGGACAGGGAAGCCAGGATGGAGCCACCGATCCAGACGGAGTATTTACGCTCAGGGGGGGCGATGCTTGATTTTCATGGTGCTGGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCGCCAGACAGCACGTTGTTGGCGTACAGGTCCTTACGAATGTCAATGTCGCACTTCATGATGCTGTTATAGGCGGTCTCGTGAATACCGGCAGACTCCATACAATAAAGGAAGGCTGGAAGAGGGTCTCTGGGCAACGGAAACGCTCGTTACCGATGGTGATGACCTGACCATCGGGAAGCTCGTAGCTCTtctccagggaggaggaggaagcggCAGTGGCCATCTCGTTCTCGAAGTCAAGAGCCAcatagcacagcttctccttgATGTCACGCACGATCTCACGCTCGGCTTTGTGACGAAGGAGTAGCCACGCTCAGTGAGgatcttcatgaggtagtcagtcagATCGCGACCAGCCAGATCCAGACGCATGATGGCGTGGGGAAGGGCATAACCCTCATAGATGGGCACGTTGTGGGTCACACCATCACCGGAGTCCAGCACAATACCTTCAGTGGTACGACCGGAGGCGTACAGGGACAGCACAGCCTGGATGGCAACATACATGGCGGGGACGTTGAAGGTCTCAAACATGATCTGGGTCATCTTTTCACGGTTAGCCTTGGGGTTCAGGGGGGCCTCAGTGAGCAGGGTGGGATGCTCCTCGGGGGCCACACGCAGCTCGTTGTAAAAGGTGTGGTGCCAGATCTTCTCCATATCGTCCCAGTTAGTAATGATACCGTGCTCGATGGGGTACTTCAGAGTGAGGATACCTCTCTTGCTCTGAGCTTCATCTCCTACGTAGGAGTCCTTCTGACCCATACCGACCATGACAccctGTGACGAGGGCGACCAACGATGGAGGGGAAGACAGCCCTGGGTGCGTCATCACCGGCGAAGCCAGCCTTCACAAGGCCGGAGCCGTTGTCGCACACAAGAGCAGTAGTCTCGTCGTCGTCACACATCTTGGGTTCTGTCTGTCTCAAATGAAGCTCAGAACACGGAAAACAACTGCTGCTGGATCGAGCTACAGTGGCACTTCCAACCTTATATACTCACCGCGTTCGGCCTATTTCCCTTACCCACCGTTGGGAATGTCTACGTATTCCATTGGACATTTACCCAGCCGTCATCCATATTAGGTTCTTCGGGGTGACAGGGGGAGACTTCGAAGGCAGGTTACAGGGCTCCCCGGTTTCGAAGTGAGCTGCAGGGCTCTCCATGTATGGGACTGTTGTCCTGATTCCAAGCCACGGTGCCAGAGCCGTATATGGAGAGCCTGTGATTTGTAAGACACCCTCATAGCATAGCAAACTTTAACTGCAAACAGGATCCCGGTTGGAAAGCCCTTCCCTTATCAAGGACCCCAACCTTATAGCCATATAGGAATGACAACACCAAGGAAAGAAGGTAGTTTACGTTCTTGTTCTGTCAAACTACTGCAGGCTGATTACAAAAATGTGAATGTTCCTTTGAGAATGGAATTCCTTTCATATAATTTTAATGCAATTGCACAGCCGTTTTAACAATGGGTTGGTCTGTAATTTTTGCTAGTTTGATCTTTGGTATTTTACTCGGTTTAGAGCTCTAGATCACAGTGGGTTATCGAAACAATGACAGATGCCCCATTGACTCAGGCCTGTAGTAGCATACGTTTAAAGAACTATTTCCATGATGCTATTTGCTATTTGCATGCatacaaagttatcattttttGAAATGTAGATTTTGTTAGAAGACCAAATAAAGGTATTATTATTCCATCAGTGTATTTATGGCCAGCGTCAGACAGATCCTCTGAAACGGATCATAACAGCG
>TU2150536
GTTTGCATTAAGTTTTATCGCGTGCGTAAACGTCCGAATGTGTGACATTTGATAACAATTAATGTGGTTGACCTTGGTATTTCCAATAGCCTATTATCTCACAGTGCCATTGCATTCAGAATGAAAATCCTAAATTTGCCATGCAGTCTACCTGTGCATGTGCACGAGTAGCCAAGCCTATTGGTTCATTGCATGATGATCATGGTATGTCTTTTCTAACATAGGCTGTTCATTACAAAACagaaatgtatgaaaataccAAATAATGGACTTTAATAACTTAGTATTTATGTACATTCACGTTCACATGTTGAATAATAACATGGCATGTTTCGTTCTTGTTGATGTTGGTTGACATTTGCAGATTTTCTCCCCAGGTAACATGGTTACAAAATAAAAGCGTGGCAAAAAAAGTCCAGTAACAACATGTTGTTTCTCTTCGCGATCCAGAGAAAGCAGACACTGGAGACGATGATAGGTTTAGAAGCACTTGCGGTGGACAATGCTGGGGCCTGCCTCGTCGTATTCCTGCTTGGTGATCCACATGGCCTGGAAAGTGGACAGGGAAGCCAGGATGGAGCCACCGATCCAGACGGAGTATTTACGCTCAGGGGGGGCGATACCTTGATTTTCATGGTGCTGGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCGCCAGACAGCACGTTGTTGGCGTACAGGTCCTTACGAATGTCAATGTCGCACTTCATGATGCTGTTATAGGCGGTCTCGTGAATACCGGCAGACTCCATACCTGTTCAGATCATATCATATTAGAAACATAATCTCTTTAATTCGACCAACATAGCAGGCATATATATTACCCCTACCCGTTATACGATGATTACGTACCAATAAAGGAAGGCTGGAAGAGGGTCTCTGGGCAACGGAAACGCTCGTTACCGATGGTGATGACCTGACCATCGGGAAGCTCGTAGCTCTtctccagggaggaggaggaagcggCAGTGGCCATCTCGTTCTCGAAGTCAAGAGCCAcatagcacagcttctccttgATGTCACGCACGATCTCACGCTCCAGTTGTGACGAAGGAGTAGCCACGCTCAGTGAGgatcttcatgaggtagtcagtcagATCGCGACCAGCCAGATCCAGACGCATGATGGCGTGGGGAAGGGCATAACCCTCATAGATGGGCACGTTGTGGGTCACACCATCACCGGAGTCCAGCACAATACAGTGGTACGACCGGAGGCGTACAGGGACAGCACAGCCTGGATGGCAACATACATGGCGGGGACGTTGAAGGTCTCAAACATGATCTGGGTCATCTTTTCACGGTTAGCCTTGGGGTTCAGGGGGGCCTCAGTGAGCAGGGTGGGATGCTCCTCGGGGGCCACACGCAGCTCGTTGTAAAAGGTGTGGTGCCAGATCTTCTCCATATCGTCCCAGTTAGTAATGATACCGTGCTCGATGGGGTACTTCAGAGTGAGGATACCTCTCTTGCTCTGAGCTTCATCTCCTACGTAGGAGTCCTTCTGACCCATACCGACCATGACAccGGTGACGAGGGCGACCAACGATGGAGGGGAAGACAGCCCTGGGTGCGTCATCACCGGCGAAGCCAGCCTTCACAAGGCCGGAGCCGTTGTCGCACACAAGAGCAGTAGTCTCGTCGTCGTCACACATCTTGGGTTCTGTCTGTCTCAAATGAAGCTCAGAACACGGAAAACAACTGCTGCTGGATCGAGCTACAGTGGCACTTCCAACCTTATATACTCACCGCGTTCGGCCTATTTCCCTTACCCACCGTTGGGAATGTCTACGTATTCCATTGGACATTTACCCAGCCGTCATCCATATTAGGTTCTTCGGGGTGACAGGGGGAGACTTCGAAGGCAGGTTACAGGGCTCCCCGGTTTCGAAGTGAGCTGCAGGGCTCTCCATGTATGGGACTGTTGTCCTGATTCCAAGCCACGGTGCCAGAGCCGTATATGGAGAGCCTGTGATTTGTAAGACACCCTCATAGCATAGCAAACTTTAACTGCAAACAGGATCCCGGTTGGAAAGCCCTTCCCTTATCAAGGACCCCAACCTTATAGCCATATAGGAATGACAACACCAAGGAAAGAAGGTAGTTTACGTTCTTGTTCTGTCAAACTACTGCAGGCTGATTACAAAAATGTGAATGTTCCTTTGAGAATGGAATTCCTTTCATATAATTTTAATGCAATTGCACAGCCGTTTTAACAATGGGTTGGTCTGTAATTTTTGCTAGTTTGATCTTTGGTATTTTACTCGGTTTAGAGCTCTAGATCACAGTGGGTTATCGAAACAATGACAGATGCCCCATTGACTCAGGCCTGTAGTAGCATACGTTTAAAGAACTATTTCCATGATGCTATTTGCTATTTGCATGCatacaaagttatcattttttGAAATGTAGATTTTGTTAGAAGACCAAATAAAGGTATTATTATTCCATCAGTGTATTTATGGCCAGCGTCAGACAGATCCTCTGAAACGGATCATAACAGCG
>TU2150537
GTTTGCATTAAGTTTTATCGCGTGCGTAAACGTCCGAATGTGTGACATTTGATAACAATTAATGTGGTTGACCTTGGTATTTCCAATAGCCTATTATCTCACAGTGCCATTGCATTCAGAATGAAAATCCTAAATTTGCCATGCAGTCTACCTGTGCATGTGCACGAGTAGCCAAGCCTATTGGTTCATTGCATGATGATCATGGTATGTCTTTTCTAACATAGGCTGTTCATTACAAAACagaaatgtatgaaaataccAAATAATGGACTTTAATAACTTAGTATTTATGTACATTCACGTTCACATGTTGAATAATAACATGGCATGTTTCGTTCTTGTTGATGTTGGTTGACATTTGCAGATTTTCTCCCCAGGTAACATGGTTACAAAATAAAAGCGTGGCAAAAAAAGTCCAGTAACAACATGTTGTTTCTCTTCGCGATCCAGAGAAAGCAGACACTGGAGACGATGATAGGTTTAGAAGCACTTGCGGTGGACAATGCTGGGGCCTGCCTCGTCGTATTCCTGCTTGGTGATCCACATGGCCTGGAAAGTGGACAGGGAAGCCAGGATGGAGCCACCGATCCAGACGGAGTATTTACGCTCAGGGGGGGCGATACCTTGATTTTCATGGTGCTGGGGGCCAGGGCAGTGATCTCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCGCCAGACAGCACGTTGTTGGCGTACAGGTCCTTACGAATGTCAATGTCGCACTTCATGATGCTGTTATAGGCGGTCTCGTGAATACCGGCAGACTCCATACCTGTTCAGATCCAATAAAGGAAGGCTGGAAGAGGGTCTCTGGGCAACGGAAACGCTCGTTACCGATGGTGATGACCTGACCATCGGGAAGCTCGTAGCTCTtctccagggaggaggaggaagcggCAGTGGCCATCTCGTTCTCGAAGTCAAGAGCCAcatagcacagcttctccttgATGTCACGCACGATCTCACGCTCCAGTTGTGACGAAGGAGTAGCCACGCTCAGTGAGgatcttcatgaggtagtcagtcagATCGCGACCAGCCAGATCCAGACGCATGATGGCGTGGGGAAGGGCATAACCCTCATAGATGGGCACGTTGTGGGTCACACCATCACCGGAGTCCAGCACATACCAGTGGTACGACCGGAGGCGTACAGGGACAGCACAGCCTGGATGGCAACATACATGGCGGGGACGTTGAAGGTCTCAAACATGATCTGGGTCATCTTTTCACGGTTAGCCTTGGGGTTCAGGGGGGCCTCAGTGAGCAGGGTGGGATGCTCCTCGGGGGCCACACGCAGCTCGTTGTAAAAGGTGTGGTGCCAGATCTTCTCCATATCGTCCCAGTTAGTAATGATACCGTGCTCGATGGGGTACTTCAGAGTGAGGATACCTCTCTTGCTCTGAGCTTCATCTCCTACGTAGGAGTCCTTCTGACCCATACCGACCATGACAccGGTGACGAGGGCGACCAACGATGGAGGGGAAGACAGCCCTGGGTGCGTCATCACCGGCGAAGCCAGCCTTCACAAGGCCGGAGCCGTTGTCGCACACAAGAGCAGTAGTCTCGTCGTCGTCACACATCTTGGGTTCTTAATAATTCAAGTAAAGATGTATGTTAATTTTTCTGCTTGGCGCACGCACGTCGGAGCTTTGTAACACATCACAGAACAAGATAGCGCAGGATGCACACCGAAACTGTATGTCCAACTTATTATGTATTGTACAAGCTAAATGTTATGATTATCTAAACAAGTCCTGTGTGTTAGCTGTCAAGCTAACACACAAGACTTGTTTAGATAATCATAACATTTACTCATGCTACTATGTCGAtattattgtaatgaaacaggcagggagcaggtctcgaaccctcgaccttttAGACCGAAGTACAGCGCACTATCGAATGTGCCGCGAAAGCATGCTCAAGCGACAAAGTCGatatccgcgcttataaacccagggtcgttacactactccctcctttcaaagagcgGGTCCTCGCGCTAGTTTGCGACTCTTCGTTTTACAGGAACGCGCTCACCGGTCAAGCACCTGCACTGTCGTTTGACACTAATGtaatgaaacaagcagggagAAGATCTCGAACCCTCGATCTTCTAGCCCGAGAGATTCACCCATTGATGTTGTCGCCCGCTGAATTGCCTACAGGACATGTTCTCCTTATTGTATACCCATGTTATAGGCCTACACTAATTTGTTCTATGAGTGTAATGATCTCTGCAATTATTTGCAGAAATTACCAAATAATCTGATAGAAAGGAACATTTATATTTTATCGCTCTTCTACCCTTCCCCATGTTGTAGCCTATACAATTCCATTAGTAATTTCTTCAGGTGAAGAGCCTGTGACATCACTATCAGTATCTTGTGTAATATTAATTGGTCCCGCAGATGTAAAATAAAACCAAATAAGAGTATTTCCATTGAAATTAATCCATAAATAGTAGATCCAGTCTTTGAGGTTTGTGTTGATTCCAGGTTCTTACCTTGTCTGTCTCAAATGAAGCTCAGAACACGGAAAACAACTGCTGCTGGATCGAGCTACAGTGGCACTTCCAACCTTATATACTCACCGCGTTCGGCCTATTTCCCTTACCCACCGTTGGGAATGTCTACGTATTCCATTGGACATTTACCCAGCCGTCATCCATATTAGGTTCTTCGGGGTGACAGGGGGAGACTTCGAAGGCAGGTTACAGGGCTCCCCGGTTTCGAAGTGAGCTGCAGGGCTCTCCATGTATGGGACTGTTGTCCTGATTCCAAGCCACGGTGCCAGAGCCGTATATGGAGAGCCTGTGATTTGTAAGACACCCTCATAGCATAGCAAACTTTAACTGCAAACAGGATCCCGGTTGGAAAGCCCTTCCCTTATCAAGGACCCCAACCTTATAGCCATATAGGAATGACAACACCAAGGAAAGAAGGTAGTTTACGTTCTTGTTCTGTCAAACTACTGCAGGCTGATTACAAAAATGTGAATGTTCCTTTGAGAATGGAATTCCTTTCATATAATTTTAATGCAATTGCACAGCCGTTTTAACAATGGGTTGGTCTGTAATTTTTGCTAGTTTGATCTTTGGTATTTTACTCGGTTTAGAGCTCTAGATCACAGTGGGTTATCGAAACAATGACAGATGCCCCATTGACTCAGGCCTGTAGTAGCATACGTTTAAAGAACTATTTCCATGATGCTATTTGCTATTTGCATGCatacaaagttatcattttttGAAATGTAGATTTTGTTAGAAGACCAAATAAAGGTATTATTATTCCATCAGTGTATTTATGGCCAGCGTCAGACAGATCCTCTGAAACGGATCATAACAGCG

Function

NR:

description
PREDICTED: actin-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2150531 False 2465 TUCP 0.48 7 53851671 53855730
TU2150536 False 2559 TUCP 0.48 6 53851671 53855730
TU2150537 True 3394 TUCP 0.46 6 53851671 53855730

Neighbor

gene id symbol gene type direction distance location
LOC110502971 LOC106610715 coding upstream 10980 53829291 ~ 53840691 (+)
LOC110502970 LOC106610710 coding upstream 59576 53784080 ~ 53792095 (+)
tbp tbp coding upstream 71557 53771355 ~ 53780114 (+)
LOC110502967 psmb1 coding upstream 98060 53751366 ~ 53753611 (+)
LOC110502965 dll1 coding upstream 194239 53651311 ~ 53657432 (+)
LOC110503035 urb2 coding downstream 12965 53868695 ~ 53893092 (+)
LOC110502975 galt2 coding downstream 46711 53902441 ~ 54027929 (+)
LOC110502976 LOC106610750 coding downstream 218626 54074356 ~ 54097821 (+)
LOC110503037 LOC106610766 coding downstream 257983 54113713 ~ 54190405 (+)
LOC110502979 LOC106610787 coding downstream 473980 54329710 ~ 54362634 (+)
G1880002 NA non-coding upstream 4669 53844233 ~ 53847002 (+)
G1880009 NA non-coding upstream 8369 53841976 ~ 53843302 (+)
G1879998 NA non-coding upstream 26307 53825058 ~ 53825364 (+)
G1879983 NA non-coding upstream 41775 53809560 ~ 53809896 (+)
G1879980 NA non-coding upstream 46799 53801037 ~ 53804872 (+)
G1880012 NA non-coding downstream 1587 53857317 ~ 53857729 (+)
G1880013 NA non-coding downstream 2102 53857832 ~ 53858086 (+)
G1880036 NA non-coding downstream 38201 53893931 ~ 53894373 (+)
G1880114 trmt13 non-coding downstream 178670 54034400 ~ 54039397 (+)
G1880136 NA non-coding downstream 245975 54101705 ~ 54101984 (+)
LOC118943904 NA other upstream 451384 53398184 ~ 53400297 (+)
G1879582 NA other upstream 473485 53377810 ~ 53378186 (+)
G1878894 LOC106610502 other upstream 991036 52857868 ~ 52860635 (+)
G1878893 NA other upstream 1015037 52825488 ~ 52836634 (+)
G1878346 LOC100136012 other upstream 1625482 52225820 ~ 52226189 (+)
G1881371 NA other downstream 1147052 55002782 ~ 55003672 (+)
G1882830 NA other downstream 2674065 56529795 ~ 56538483 (+)
G1882831 NA other downstream 2677887 56533617 ~ 56543256 (+)
LOC110503001 LOC106611028 other downstream 2817518 56613066 ~ 56727194 (+)
G1883457 NA other downstream 3156307 57012037 ~ 57013218 (+)

Expression


Co-expression Network