G1880628


Basic Information

Item Value
gene id G1880628
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 54025879 ~ 54027582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2151332
AAATAACTTTGGCACATTGTGCTATGTAAACATTTCATCCAATTAAAATGTGGCTGTAATGCTAGGATTCTTTTTTTTCTCCTAAAGTGAACAGCAAACTTGTCATTTTCACACAAATCTTACAAAAAAGGCTTGATTCAATACTTGAACAACCGTTGCCACCATGTAGACTATGTTCACCCGAGCAATCCCTTTTAGTACTGTAGAGGCCACCTGAATTTCACATTAGAATTGTTTCAATTTCAACAGTGACGTACATGATAACAGACAAAGCTCTTACCATGTGAAACTTGTCAACTCATCTCACACTGGAGGTTACAACCCCCAACTCATCTCACACGGGAGGTTACAACCCCCAACTCATCTCACACGGGAGGTTACAACCCCCAACTCAACTCATAACGGAGGTTACAACCCCCAACTCATCTCATGATTTCATAGTCCTGCTCTCACACGGATCTCACATTCTTCAACTGCAGAGAAAATATTATGGTCTGTTTCCTCTCTTACTGTGGGACACCTGTCTTACTGTGGGACACCTCTCTTACTGTGGGACACCTCTCTTACTGTGGGACACCTCTCTTTGGCATTTTGTAAATGCAATACCTTTTCCACAAGCGTCAGATAGGGACTGCTGCATATGCTCCGTCGCTGTGATGCTCATTCCTGTACTGATGGTTGGAGATTCCTTTTGTATCAGGAAGTTTGACCAGAATGGTGTAGAACACACAGGGACTGATGTGTAGGACTTACACAGATTACCATAACCCTACATTTTATGCATATATAATGAGGGCTTCCAAAAGAATAAGTAATTTGCTATTCTAGAATAAATTAATCTCCATTGATATCAGGGGAACCCCCACGAGACAAAACCAATGTCACGTCAATGGATTAATTGTTGCTTTCATAAGTCGTTATAGGCTCCTTTGGCCATCACATTAAAGGTGGGTTCTGCTGCCCCTCAGAAACAAACAGTAACGTTTAAAGTACCACATAGCACAAGCTACATGTAGAAACCCAATCAGAATGGTCCCGAAGCAGATGCTAAATGCACAACAATGACATTGAAATAGGAATATCTTATTGCTTTTCTCCCTTGTGAGTGCAGTTAACTATAGCCGAATGACCTGCCCTCCTTCATGAAACCTGTTGAAAGCTGTTCACTAGCACACAGACACATTCTCTTTTAAATGGGATGGATATCAAAAAAGGCAAAGACATCATTCACAAAGCATGCGAGTAATGTCGAGAAACAAATGGACAGAAAGAGAAACTGTAGGAGAAAAAAGCCGTAGAAGTATTGGTAGAACATGCAGCAAGGCCTCGCCATGTACCGTGTACATGCTGTCTGTCACTTAGCGCGCTGAACATGTGGCATTTTCTAAAATGTCAAATCACAAATACATACACTGTGTGAGACAACACTTGTCGACTTCTGAGAATGGAAATGACGGTTCCAACATTACCCTGTAATAAACTCTTCACCAATACTGATTTGGATGCAATGGTAACACCGACACTGAAAaggacaactttttttttttttttagaaagtaAGTAGATCTGTTTTTACTCACAAGAGAACTGTCAGAATGCAACAATAGTACAAAGAAATACCTGTCCAATTTACTGTGTTACTgattattctacagtataattgaacacaaaac
>TU2151334
AAATAACTTTGGCACATTGTGCTATGTAAACATTTCATCCAATTAAAATGTGGCTGTAATGCTAGGATTCTTTTTTTTCTCCTAAAGTGAACAGCAAACTTGTCATTTTCACACAAATCTTACAAAAAAGGCTTGATTCAATACTTGAACAACCGTTGCCACCATGTAGACTATGTTCACCCGAGCAATCCCTTTTAGTACTGTAGAGGCCACCTGAATTTCACATTAGAATTGTTTCAATTTCAACAGTGACGTACATGATAACAGACAAAGCTCTTACCATGTGAAACTTGTCAACTCATCTCACACTGGAGGTTACAACCCCCAACTCATCTCACACGGGAGGTTACAACCCCCAACTCATCTCACACGGAAGGTTACAACCCCCAACTCAACTCATAACGGAGGTTACAACCCCCAACTCATCTCATGATTTCATAGTCCTGCTCTCACACGGATCTCACATTCTTCAACTGCAGAGAAAATATTATGGTCTGTTTCCTCTCTTACTGTGGGACACCTGTCTTACTGTGGGACACCTCTCTTACTGTGGGACACCTCTCTTACTGTGGGACACCTCTCTTTGGCATTTTGTAAATGCAATACCTTTTCCACAAGCGTCAGATAGGGACTGCTGCATATGCTCCGTCGCTGTGATGCTCATTCCTGTACTGATGGTTGGAGATTCCTTTTGTATCAGGAAGTTTGACCAGAATGGTGTAGAACACACAGGGACTGATGTGTAGGACTTACACAGATTACCATAACCCTACATTTTATGCATATATAATGAGGGCTTCCAAAAGAATAAGTAATTTGCTATTCTAGAATAAATTAATCTCCATTGATATCAGGGGAACCCCCACGAGACAAAACCAATGTCACGTCAATGGATTAATTGTTGCTTTCATAAGTCGTTATAGGCTCCTTTGGCCATCACATTAAAGGTGGGTTCTGCTGCCCCTCAGAAACAAACAGTAACGTTTAAAGTACCACATAGCACAAGCTACATGTAGAAACCCAATCAGAATGGTCCCGAAGCAGATGCTAAATGCACAACAATGACATTGAAATAGGAATATCTTATTGCTTTTCTCCCTTGTGAGTGCAGTTAACTATAGCCGAATGACCTGCCCTCCTTCATGAAACCTGTTGAAAGCTGTTCACTAGCACACAGACACATTCTCTTTTAAATGGGATGGATATCAAAAAAGGCAAAGACATCATTCACAAAGCATGCGAGTAATGTCGAGAAACAAATGGACAGAAAGAGAAACTGTAGGAGAAAAAAGCCGTAGAAGTATTGGTAGAACATGCAGCAAGGCCTCGCCATGTACCGTGTACATGCTGTCTGTCACTTAGCGCGCTGAACATGTGGCATTTTCTAAAATGTCAAATCACAAATACATACACTGTGTGAGACAACACTTGTCGACTTCTGAGAATGGAAATGACGGTTCCAACATTACCCTGTAATAAACTCTTCACCAATACTGATTTGGATGCAATGGTAACACCGACACTGAAAaggacaactttttttttttttttagaaagtaAGTAGATCTGTTTTTACTCACAAGAGAACTGTCAGAATGCAACAATAGTACAAAGAAATACCTGTCCAATTTACTGTGTTACTgattattctacagtataattgaacacaaaac
>TU2151335
AAATAACTTTGGCACATTGTGCTATGTAAACATTTCATCCAATTAAAATGTGGCTGTAATGCTAGGATTCTTTTTTTTCTCCTAAAGTGAACAGCAAACTTGTCATTTTCACACAAATCTTACAAAAAAGGCTTGATTCAATACTTGAACAACCGTTGCCACCATGTAGACTATGTTCACCCGAGCAATCCCTTTTAGTACTGTAGAGGCCACCTGAATTTCACATTAGAATTGTTTCAATTTCAACAGTGACGTACATGATAACAGACAAAGCTCTTACCATGTGAAACTTGTCAACTCATCTCACACTGGAGGTTACAACCCCCAACTCATCTCACACGGGAGGTTACAACCCCCAACTCAACTCATAACGGAGGTTACAACCCCCAACTCATCTCATGATTTCATAGTCCTGCTCTCACACGGATCTCACATTCTTCAACTGCAGAGAAAATATTATGGTCTGTTTCCTCTCTTACTGTGGGACACCTGTCTTACTGTGGGACACCTCTCTTACTGTGGGACACCTCTCTTACTGTGGGACACCTCTCTTTGGCATTTTGTAAATGCAATACCTTTTCCACAAGCGTCAGATAGGGACTGCTGCATATGCTCCGTCGCTGTGATGCTCATTCCTGTACTGATGGTTGGAGATTCCTTTTGTATCAGGAAGTTTGACCAGAATGGTGTAGAACACACAGGGACTGATGTGTAGGACTTACACAGATTACCATAACCCTACATTTTATGCATATATAATGAGGGCTTCCAAAAGAATAAGTAATTTGCTATTCTAGAATAAATTAATCTCCATTGATATCAGGGGAACCCCCACGAGACAAAACCAATGTCACGTCAATGGATTAATTGTTGCTTTCATAAGTCGTTATAGGCTCCTTTGGCCATCACATTAAAGGTGGGTTCTGCTGCCCCTCAGAAACAAACAGTAACGTTTAAAGTACCACATAGCACAAGCTACATGTAGAAACCCAATCAGAATGGTCCCGAAGCAGATGCTAAATGCACAACAATGACATTGAAATAGGAATATCTTATTGCTTTTCTCCCTTGTGAGTGCAGTTAACTATAGCCGAATGACCTGCCCTCCTTCATGAAACCTGTTGAAAGCTGTTCACTAGCACACAGACACATTCTCTTTTAAATGGGATGGATATCAAAAAAGGCAAAGACATCATTCACAAAGCATGCGAGTAATGTCGAGAAACAAATGGACAGAAAGAGAAACTGTAGGAGAAAAAAGCCGTAGAAGTATTGGTAGAACATGCAGCAAGGCCTCGCCATGTACCGTGTACATGCTGTCTGTCACTTAGCGCGCTGAACATGTGGCATTTTCTAAAATGTCAAATCACAAATACATACACTGTGTGAGACAACACTTGTCGACTTCTGAGAATGGAAATGACGGTTCCAACATTACCCTGTAATAAACTCTTCACCAATACTGATTTGGATGCAATGGTAACACCGACACTGAAAaggacaactttttttttttttttagaaagtaAGTAGATCTGTTTTTACTCACAAGAGAACTGTCAGAATGCAACAATAGTACAAAGAAATACCTGTCCAATTTACTGTGTTACTgattattctacagtataattgaacacaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2151332 False 1673 lncRNA 0.40 2 54025879 54027582
TU2151334 False 1673 lncRNA 0.40 2 54025879 54027582
TU2151335 True 1642 lncRNA 0.40 2 54025879 54027582

Neighbor

gene id symbol gene type direction distance location
LOC110502973 abcb10 coding downstream 161317 53858719 ~ 53864562 (-)
LOC100135949 actc1 coding downstream 170843 53851919 ~ 53855036 (-)
ccsapb LOC106610728 coding downstream 174227 53848627 ~ 53851652 (-)
pdcd2 pdcd2 coding downstream 241797 53779267 ~ 53784082 (-)
LOC110502966 phf10 coding downstream 291259 53716988 ~ 53734620 (-)
LOC110503036 LOC106610742 coding upstream 11436 54039018 ~ 54073953 (-)
LOC110503071 NA coding upstream 185675 54213257 ~ 54217097 (-)
LOC110502978 LOC106610780 coding upstream 225299 54252881 ~ 54282773 (-)
LOC110502980 LOC106610792 coding upstream 351835 54379417 ~ 54423946 (-)
LOC110502982 LOC106610932 coding upstream 534360 54561942 ~ 54563802 (-)
G1880651 NA non-coding downstream 11326 54014124 ~ 54014553 (-)
G1880563 NA non-coding downstream 48771 53902464 ~ 53977108 (-)
G1880561 NA non-coding downstream 125763 53899856 ~ 53900116 (-)
G1880557 NA non-coding downstream 134253 53891358 ~ 53891626 (-)
G1880556 NA non-coding downstream 136693 53888839 ~ 53889186 (-)
G1880704 NA non-coding upstream 74375 54101957 ~ 54102192 (-)
G1880715 NA non-coding upstream 92181 54119763 ~ 54119990 (-)
G1880719 NA non-coding upstream 99256 54126838 ~ 54127042 (-)
G1880726 NA non-coding upstream 111111 54138693 ~ 54138990 (-)
G1880729 NA non-coding upstream 113548 54141130 ~ 54141448 (-)
G1879406 NA other downstream 861528 53163242 ~ 53164351 (-)
G1878770 NA other downstream 1382370 52643088 ~ 52643509 (-)
LOC110502957 LOC106610540 other downstream 1710101 52271405 ~ 52315778 (-)
G1878324 NA other downstream 1818252 52207428 ~ 52207627 (-)
G1878101 NA other downstream 1988129 52036596 ~ 52037750 (-)
G1880780 NA other upstream 217200 54244782 ~ 54246686 (-)
G1881414 NA other upstream 975184 55002766 ~ 55003624 (-)
G1883219 NA other upstream 2578424 56606006 ~ 56610640 (-)
G1883244 NA other upstream 2616425 56644007 ~ 56709888 (-)

Expression


Co-expression Network