G1880114 (trmt13)


Basic Information

Item Value
gene id G1880114
gene name trmt13
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 54034400 ~ 54039397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2150712
TAGAAGTGTTTATTTTGAACAGTTGTTGACTGTATCATGCATACTTCTTGGTGTCTATCAATATAACAATTCAGAAGAAAAGAGCATTGTTATGAACATTATCAACCGATGTATGGCCTGTCAGAGCTTCTTTCAGACAGTGATCAGTGCACAGAACTAGTGgctcacacaaacatacacaagaacgacaatgttttttgggggaaagAAAATGTGAAAAATGACAATCATTTGTCTTACCTATAAGTGAAGACTAATAGAACTATAATCATACACTAAAAAAAATATAatcgcaacatgtgaagtgttggtcccatgttttatgagctgaaataaaagatggcagaaatgttccatacgcacaaaaagcttacttcgctcaaattttgtgcacacatttatttacatccctgttagtgagcatttctcctttgccaagattatccatccacatgacaggtgtggcatatcaagaagctaattacacagcatgatcattacattgATGAGAATCGCAGAAGGGTGAACTTAACTAAACGACTGAGAGTTTTGACTGTGTGATATTAGATTGcttcttgtgtaaatattttctgTCTGGATTTTAATGATTTGTATGTACATTacagcaccttgtgctggggacaaaaggccactaaaatgtgcagttttgccacacaacacaatgccacagatgtctcaagatgAGGACGCGTACAATTGgaattctgactgcaggaatgtccaacagagttgttgccagagaatttaatgttcatttctctaccataaatgttgttttatagaatttggcagtacgtcctcACAACCGCagttgtgtgggcgagtggttcaCTGATGTTAACGTTGTTGGCAGAGTTCCCAAATGGTGGAGGTGGGTTTACTgcatggtatgggcaggcataagctatggacaacgaacacagttGATTTTATCGATGgtcatttgaatgcacagagataccttgatgagatcctgaggcccattgtcgtgccattcttcaacctcatgtttcagcatgataatgcactgccccaaggatctgtacacaattcctggaagctgaaaatgtcccagttcttccatggcctgcatactcacaagacatgtcacccgttgagcatgtttgggatgctctggatcgacgtgtacgacagtgtgttccagttcccaccaatatccatcaactttgcacagccattgaagaggagtgggacaacattccacaggccacaatcaacagcctgatcaactctatgtgaaggagatgttgcGCTGCAagaggcaaatggtcacaccagatactgactggttttctgatccacgcccctaccttttatagttgttatctgtgaccaatagatgcatatatgtattaccagtcatgtgaaatccatagattaggtcctaatgaatttatttcaattgactgatgtccttatatgaactgtaactctgtgaaatctttcaaatggttgcatgttgcctttatatttttgttcagtatacataccTGATctgcacacaaaaacacatttaccacAATTGCCTATGCACATATATATTTAGGTAAATATTCAGAACATTTTCAATTTCATTGGTTTTTAGTGTTCATCATCTACTTTAGTTGATCAGCAATATCCCCTTTAAATCATTCCTACATAAATATTGTAGCGCTAGGTTGCATAAGTCAGCACTCAATAGACACTCATTTCCCTTTCTAGTAAACTTTGATTTCCTGCTTCTTCAAAGAATATTCGAGCACTCAATAATTAGGGAGGAAACTTAGCAGTTAAACAGCATTAAATCTTCAGTATTCTGTGACAGAGCATGGATTTACACAATAGTTATGGAGTATTAATGTGCATAATTTAACTCCTATTTTCTGAGGAAGCATTTAGTACAACCATTAATTAAAGGGATTCATCATAGCTAGGGATATTTAGTAAACATCAATAGACCTTTATTGAATCACTTTAAAGTGCAAGACGATCGAAAGTGCATGAGTAGTGCCCTAGTTAGGACAAATCTCACAAACACTTCACACATCAATAAGACAGTCACAGTGGCAAGGAGTGGACAAGCATGAATGTATGTTATCGGCCAAGGGATAAaataggcctgtgtgtgtggacTTTGGAATTGCACACTTTTACACTGACATAAGTCTATTGGCCAAGAAGACATTATTAACCCACAGTGACATTCACTTCACTGACTTAAACAGCTCCACATACAACACATTGGGGTACTATTCTGTCTCCACACAAGATGCAAGACAGCACCCTCTCAAAGTCATTACAGAACAGGAGAATCCATTCTCCAAAGCACATTTGGAAGGAATAACGTTGACAAACTTCTGTGGGTCTGGTGTTGTCTTCTCTCCATCTTTTAGTGACATCATTGGACTGAGAGTCATTGGCTGATGGTATGAAATGTTTAACTCAAACTCAAATCACATACTTTATAGATCAATGTCAGGCTTGCTTCCAGGGAATGCGCTGTGGACGTGACCAGCCGAGCCAGAGACCCCGCCCTATTCAGTAGACCTGAACTGGGAACAGCCCATGTCTGTGTGGTCTGTCAGTGAGTGAGTATGGCTGTCAGCGTGTATATCTAGAGTTGAACTGAACTGACCCCTGCAGCTCTCGATGATCCAAGACTATGCCACATTGAGACTGCGTCCATGCTGTACATTAACAGTACGCCTCATCCAAACCAACGTTCATGTGGCCAGCATTGGCAAGGACTGGTATCGTTTATCATATCATCAAACCTTCCCTTTGCAGTCTGAAAACCTGACCACAAGTCACACCATCCAGTATTTCCAATGATGTTGCAAATATAAGGACTGCCAGTCATATAATCTGATGACAAGTTGAAAGGTTCCTATTGACTGAGATATGGAGTTGAGTACAGTAAGCACAACCCTGATAAGTAGGAGATTTCCCATTCCAGGTATGAACCATCAGCAGAAAGAGCTCTGGAAGGAAATAGTAACGTAGGTCTACTTCTCCTCCATATTTCATTTAAACATCATGGATCCTGggcattatgtatatatacagtatatctgctTAGTGGTTCAGGTCTATCTTGGAGAGAAAATCCCAGATTTTGCTCGGTAGGTGGTCCAATAGAATCATAGCTTGACATTACAGAGTGACATTGCGCTACATGGAAATAACGTTTAACCCGGTCAGAAAAAAATGAGAAACATTCTGCACATTTGAAGAGTAAATTATCCAAACACTTTTTTGTCATGCAGCCTGTGACACTAACATTATGAGGCATGTGGATAGTACAATGGCTTTGCTTTGTGCCTCAGTAAAGAAACATCTCTCTTGAGTTCAGACTCAGATATAGAGACCTGCGCTCTACACCTAGAGGTTTTGTCCCCAAACCCATTTAACACAGACACTATTAAAATATGGTTTCATTTAAGGAATTACGTATTCCAGTGTCTGTAAAGAAAATATGTGTTAGTGGGTGTGGTTAGTGTGCGTTAGTGGTTTGCGTGTGATGAACAGTGTGTGTTTGGGTACGTGTGAGacgtgaaagtgtgtgtgtgtgtgtgagaCGTGACAATGTGTGTACGTGTGAGacgtgacagtgtgtgtacatgtgagacgtgacagtgtgtgtgtgtgtgtgtgtgttcacgtgtgagatgtgacagtgtgtgttggtacgtgtgagacgtgacagtgtgtgtgggtacgtgtgtgacgtgacagtgtgtgtgtgtgtgtgtgtgttcacgtgtgagatgtgacagtgtgtgttggtACGTTTGagatgtgacagtgtgtgtgggtacgtgtgtgacgtgacagtgtgtgtgtgagagagagagagtcgtgacagtgtgtgtgtgagagacgtgacagtgtgtgtgtacgtgtgagacgtgacagtgtgtgtgtgtgtgtgtgtgtgttcacgtgtgagacgtgacagtgtgtgtgtgtgcacgtgtgagacgtgacagtgtgtgtgtgtgtgtgtgttcacgtgtgagatgtgacagtgtgtgttggtACGTTTGAgacgtgacagtgtgtgtgtgtgtgtgtgtgttcacgtgtgagatgtgacagtgtgtgttggtACGTTTGagatgtgacagtgtgtgtgggtacgtgtgtgacgtgacagtgtgtgtgtgtgtgtgtgtgttcaagtgtGAGACGTGACAGTGTGTGTTGGTACGTGTGTgacgtgactgtgtgtgtgtgtgtgtgtgtgtgtgtgttcacgtgtgagacgtgacagtgtgtgtgggtacgtgtgtaacgtgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcacgtgaCAGTGTGTGTTGGTACGTGTGTGTGGGTACGTGTGTGacatgacagtgtgtgtgggtacgtgtgtgacatgacagtgtgtgtgggtacgtgtgtgacgtgacagtgtgtgtgggtacagtatGTGGGTGTATATGATAAAGATTACGTGGTCTCCTCACTGGGTGGGGGAGCAGTCATCTAAATCCAGCAGCTCCCTCACCAGTCTCTCACCAAACTGAGCTCGGCTGTAGCGCTTGATGTGGTAGGCATCGGACATCTTGTACAGAATATAGGCGTTGTTTATGGCCATGCTGATGGTCAGCCAGAACACCTGCTGCCACGTCTTGTTGGGCTTGTGGAAGATAAAATACCTGAAAGAAAATACCAAACCTGATTGGCTAACTGGGATCTT
>TU2150713
TCTTCAGTATTCTGTGACAGAGCATGGATTTACACAATAGTTATGGAGTATTAATGTGCATAATTTAACTCCTATTTTCTGAGGAAGCATTTAGTACAACCATTAATTAAAGGGATTCATCATAGCTAGGGATATTTAGTAAACATCAATAGACCTTTATTGAATCACTTTAAAGTGCAAGACGATCGAAAGTGCATGAGTAGTGCCCTAGTTAGGACAAATCTCACAAACACTTCACACATCAATAAGACAGTCACAGTGGCAAGGAGTGGACAAGCATGAATGTATGTTATCGGCCAAGGGATAAaataggcctgtgtgtgtggacTTTGGAATTGCACACTTTTACACTGACATAAGTCTATTGGCCAAGAAGACATTATTAACCCACAGTGACATTCACTTCACTGACTTAAACAGCTCCACATACAACACATTGGGGTACTATTCTGTCTCCACACAAGATGCAAGACAGCACCCTCTCAAAGTCATTACAGAACAGGAGAATCCATTCTCCAAAGCACATTTGGAAGGAATAACGTTGACAAACTTCTGTGGGTCTGGTGTTGTCTTCTCTCCATCTTTTAGTGACATCATTGGACTGAGAGTCATTGGCTGATGGTATGAAATGTTTAACTCAAACTCAAATCACATACTTTATAGATCAATGTCAGGCTTGCTTCCAGGGAATGCGCTGTGGACGTGACCAGCCGAGCCAGAGACCCCGCCCTATTCAGTAGACCTGAACTGGGAACAGCCCATGTCTGTGTGGTCTGTCAGTGAGTGAGTATGGCTGTCAGCGTGTATATCTAGAGTTGAACTGAACTGACCCCTGCAGCTCTCGATGATCCAAGACTATGCCACATTGAGACTGCGTCCATGCTGTACATTAACAGTACGCCTCATCCAAACCAACGTTCATGTGGCCAGCATTGGCAAGGACTGGTATCGTTTATCATATCATCAAACCTTCCCTTTGCAGTCTGAAAACCTGACCACAAGTCACACCATCCAGTATTTCCAATGATGTTGCAAATATAAGGACTGCCAGTCATATAATCTGATGACAAGTTGAAAGGTTCCTATTGACTGAGATATGGAGTTGAGTACAGTAAGCACAACCCTGATAAGTAGGAGATTTCCCATTCCAGGTATGAACCATCAGCAGAAAGAGCTCTGGAAGGAAATAGTAACGTAGGTCTACTTCTCCTCCATATTTCATTTAAACATCATGGATCCTGggcattatgtatatatacagtatatctgctTAGTGGTTCAGGTCTATCTTGGAGAGAAAATCCCAGATTTTGCTCGGTAGGTGGTCCAATAGAATCATAGCTTGACATTACAGAGTGACATTGCGCTACATGGAAATAACGTTTAACCCGGTCAGAAAAAAATGAGAAACATTCTGCACATTTGAAGAGTAAATTATCCAAACACTTTTTTGTCATGCAGCCTGTGACACTAACATTATGAGGCATGTGGATAGTACAATGGCTTTGCTTTGTGCCTCAGTAAAGAAACATCTCTCTTGAGTTCAGACTCAGATATAGAGACCTGCGCTCTACACCTAGAGGTTTTGTCCCCAAACCCATTTAACACAGACACTATTAAAATATGGTTTCATTTAAGGAATTACGTATTCCAGTGTCTGTAAAGAAAATATGTGTTAGTGGGTGTGGTTAGTGTGCGTTAGTGGTTTGCGTGTGATGAACAGTGTGTGTTTGGGTACGTGTGAGacgtgaaagtgtgtgtgtgtgtgtgtacacacgtgTTTGGGTACATGTGAgacatgacagtgtgtgtgtgagatgtgacactgtgtgtgtgtgtgtgtgtgtgttcacgtgtgAGACGTGACAGTGTGTGTTGGTACGTGTGTgacgtgactgtgtgtgtgtgtgtgtgtgtgagtgtgagagagagagagagtcgtgacagtgtgtgtgtacgtgtgagacgtgacagtgtgtgtgtgtgtgtgtgttcacgtgtgagatgtgacagtgtgtgttggtACGTTTGAgacgtgacagtgtgtgtgtgtgtgtgtgtgttcacgtgtgagatgtgacagtgtgtgttggtACGTTTGagatgtgacagtgtgtgtgggtacgtgtgtgacgtgacagtgtgtgtgtgtgtgtgtgtgttcaagtgtGAGACGTGACAGTGTGTGTTGGTACGTGTGTgacgtgactgtgtgtgtgtgtgtgtgtgtgtgtgtgttcacgtgtgagacgtgacagtgtgtgtgggtacgtgtgtaacgtgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcacgtgaCAGTGTGTGTTGGTACGTGTGTGTGGGTACGTGTGTGacatgacagtgtgtgtgggtacgtgtgtgacatgacagtgtgtgtgggtacgtgtgtgacgtgacagtgtgtgtgggtacagtatGTGGGTGTATATGATAAAGATTACGTGGTCTCCTCACTGGGTGGGGGAGCAGTCATCTAAATCCAGCAGCTCCCTCACCAGTCTCTCACCAAACTGAGCTCGGCTGTAGCGCTTGATGTGGTAGGCATCGGACATCTTGTACAGAATATAGGCGTTGTTTATGGCCATGCTGATGGTCAGCCAGAACACCTGCTGCCACGTCTTGTTGGGCTTGTGGAAGATAAAATACCTGAAAGAAAATACCAAACCTGATTGGCTAACTGGGATCTT

Function

symbol description
trmt13 Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human TRMT13 (tRNA methyltransferase 13 homolog).

NR:

description
PREDICTED: piggyBac transposable element-derived protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2150712 False 4752 lncRNA 0.43 2 54034400 54039397
TU2150713 True 2716 lncRNA 0.44 3 54036226 54039397

Neighbor

gene id symbol gene type direction distance location
LOC110502975 galt2 coding upstream 6471 53902441 ~ 54027929 (+)
LOC110503035 urb2 coding upstream 141308 53868695 ~ 53893092 (+)
LOC110502971 LOC106610715 coding upstream 193709 53829291 ~ 53840691 (+)
LOC110502970 LOC106610710 coding upstream 242305 53784080 ~ 53792095 (+)
tbp tbp coding upstream 254286 53771355 ~ 53780114 (+)
LOC110502976 LOC106610750 coding downstream 34959 54074356 ~ 54097821 (+)
LOC110503037 LOC106610766 coding downstream 74316 54113713 ~ 54190405 (+)
LOC110502979 LOC106610787 coding downstream 290313 54329710 ~ 54362634 (+)
LOC110502981 LOC106610814 coding downstream 389421 54428818 ~ 54462406 (+)
si:ch73-52p7.1 NA coding downstream 432198 54471595 ~ 54472979 (+)
G1880036 NA non-coding upstream 140027 53893931 ~ 53894373 (+)
G1880013 NA non-coding upstream 176314 53857832 ~ 53858086 (+)
G1880012 NA non-coding upstream 176671 53857317 ~ 53857729 (+)
G1880002 NA non-coding upstream 187398 53844233 ~ 53847002 (+)
G1880009 NA non-coding upstream 191098 53841976 ~ 53843302 (+)
G1880136 NA non-coding downstream 62308 54101705 ~ 54101984 (+)
G1880139 NA non-coding downstream 65358 54104755 ~ 54105015 (+)
G1880153 NA non-coding downstream 83146 54122543 ~ 54123327 (+)
G1880160 NA non-coding downstream 88352 54127749 ~ 54128045 (+)
G1880162 NA non-coding downstream 90240 54129637 ~ 54129839 (+)
G1879958 NA other upstream 178670 53851671 ~ 53855730 (+)
LOC118943904 NA other upstream 634113 53398184 ~ 53400297 (+)
G1879582 NA other upstream 656214 53377810 ~ 53378186 (+)
G1878894 LOC106610502 other upstream 1173765 52857868 ~ 52860635 (+)
G1878893 NA other upstream 1197766 52825488 ~ 52836634 (+)
G1881371 NA other downstream 963385 55002782 ~ 55003672 (+)
G1882830 NA other downstream 2490398 56529795 ~ 56538483 (+)
G1882831 NA other downstream 2494220 56533617 ~ 56543256 (+)
LOC110503001 LOC106611028 other downstream 2633851 56613066 ~ 56727194 (+)
G1883457 NA other downstream 2972640 57012037 ~ 57013218 (+)

Expression

G1880114(trmt13) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G1880114(trmt13) Expression in each Bioproject

Bar chart with 21 bars.
G1880114(trmt13) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network