G1880702


Basic Information

Item Value
gene id G1880702
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 54191359 ~ 54192015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2151446
ttccgaaagtattcaaacaccttgactttttcaacatttgttacgttatagccttattctaaaatggattagattaattttttacctcatcaatctacacacattaccccagaatgacaaagcaaaaacaggttattagaagctttcgcaggtagcctagtagttagagcgctgggccaataaccaaaaggtcactggttcgaatacCCGAGTCAACAAGGTCTATcgatatgcccttgagcaaggcacttaaccttaatttGCTCCATGGGGActgtactactatgactgaccctgtaaaacaacacatttcactgcacctattcaGTGTGTGAATCTTGACATTTTtaagcggatctgattgaatagagccttAAGTCAACATATTACACCATTTAAGTGGCCATGGGGTCACTTTTAGTCTATGTAGCTAATACTGAAGGGTTATGGCATCTTCTTCCTGAGCATACACCGTTGATGGTTCACATAAATGttattattttgactattttccacattgcagaataataatgaagacatcaaaac
>TU2151447
ttccgaaagtattcaaacaccttgactttttcaacatttgttacgttatagccttattctaaaatggattagattaattttttacctcatcaatctacacacattaccccagaatgacaaagcaaaaacaggttattagaagctttcgcaggtagcctagtagttagagcgctgggccaataaccaaaaggtcactggttcgaatacCCGAGTCAACAAGGTCTATcgatatgcccttgagcaaggcacttaaccttaatttGCTCCATGGGGActgtactactatgactgaccctgtaaaacaacacatttcactgcacctattcaGTGTGTGAATCTTGACATTTTtaagcggatctgattgaatagagccttAAGTCAACATATTACACCATTTAAGTGGCCATGGGGTCACTTTTAGTCTATGTAGCTAATACTGAAGGGTTATGGCATCTTCTTCCTGAGCATACACCGTTGATGGTTCACATAAATG
>TU2151448
ttatttttttgagcagtgtatatatatatacacacacacacacatatatacacacacatacacatatatatatatacatacatatttttatatataaatatatacagtgcattccgaaagtattcaaacaccttgactttttcaacatttgttacgttatagccttattctaaaatggattagattaattttttacctcatcaatctacacacattaccccagaatgacaaagcaaaaacaggttattagaagctttcgcaggtagcctagtagttagagcgctgggccaataaccaaaaggtcactggttcgaatacCCGAGTCAACAAGGTCTATcgatatgcccttgagcaaggcacttaaccttaatttGCTCCATGGGGActgtactactatgactgaccctgtaaaacaacacatttcactgcacctattcaGTGTGTGAATCTTGACATTTTtaagcggatctgattgaatagagccttAAGTCAACATATTACACCATTTAAGTGGCCATGGGGTCACTTTTAGTCTATGTAGCTAATACTGAAGGGTTATGGCATCTTCTTCCTGAGCATACACCGTTGATGGTTCACATAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2151446 False 546 lncRNA 0.38 1 54191359 54191904
TU2151447 False 493 lncRNA 0.39 1 54191412 54191904
TU2151448 True 604 lncRNA 0.36 1 54191412 54192015

Neighbor

gene id symbol gene type direction distance location
LOC110503036 LOC106610742 coding downstream 117406 54039018 ~ 54073953 (-)
LOC110502973 abcb10 coding downstream 326797 53858719 ~ 53864562 (-)
LOC100135949 actc1 coding downstream 336323 53851919 ~ 53855036 (-)
ccsapb LOC106610728 coding downstream 339707 53848627 ~ 53851652 (-)
pdcd2 pdcd2 coding downstream 407277 53779267 ~ 53784082 (-)
LOC110503071 NA coding upstream 21242 54213257 ~ 54217097 (-)
LOC110502978 LOC106610780 coding upstream 60866 54252881 ~ 54282773 (-)
LOC110502980 LOC106610792 coding upstream 187402 54379417 ~ 54423946 (-)
LOC110502982 LOC106610932 coding upstream 369927 54561942 ~ 54563802 (-)
LOC110502984 perp coding upstream 442864 54634879 ~ 54647948 (-)
G1880699 NA non-coding downstream 116 54190442 ~ 54191243 (-)
G1880729 NA non-coding downstream 49911 54141130 ~ 54141448 (-)
G1880726 NA non-coding downstream 52369 54138693 ~ 54138990 (-)
G1880719 NA non-coding downstream 64317 54126838 ~ 54127042 (-)
G1880715 NA non-coding downstream 71369 54119763 ~ 54119990 (-)
G1880749 NA non-coding upstream 1702 54193717 ~ 54194136 (-)
G1880757 NA non-coding upstream 12648 54204663 ~ 54204905 (-)
G1880763 NA non-coding upstream 26141 54218156 ~ 54218855 (-)
G1880772 NA non-coding upstream 41258 54233273 ~ 54233479 (-)
G1880773 NA non-coding upstream 41558 54233573 ~ 54233864 (-)
G1879406 NA other downstream 1027008 53163242 ~ 53164351 (-)
G1878770 NA other downstream 1547850 52643088 ~ 52643509 (-)
LOC110502957 LOC106610540 other downstream 1875581 52271405 ~ 52315778 (-)
G1878324 NA other downstream 1983732 52207428 ~ 52207627 (-)
G1880780 NA other upstream 52767 54244782 ~ 54246686 (-)
G1881414 NA other upstream 810751 55002766 ~ 55003624 (-)
G1883219 NA other upstream 2413991 56606006 ~ 56610640 (-)
G1883244 NA other upstream 2451992 56644007 ~ 56709888 (-)
LOC110503007 LOC106586972 other upstream 2920118 57071327 ~ 57116725 (-)

Expression


Co-expression Network