G1880836


Basic Information

Item Value
gene id G1880836
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 54358975 ~ 54364399 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2151600
caagtgttgttttttttcatCACGAAGGCATatactattttctctgtatattacttgttatatatttatatagaaaCAAAAATAACGGTACATTTTTGCTGAATAAGATTGAAGAATACCAGCAAAGGGCAATGTAAACCATGTTCCATCAAACTTAGCTAAAAAGGTAACTTAACCTACCCTTTCCCACATTTCAACAGTAACATATTTGCATAGGCAAAATGAGATTAGCCCTTTTAACAGTGTATTTCCTGAATTCTTTATATATCTAAAAATCTTTTTCCAGTTGAACACAATTAAacaatcaaacaaacaaaaaagtaaaCTAGGCTATTCATCCTAACGCTCAATACATATTTTCTGTGCACATTTTGTTTACAGTGTTTTAGGCTTCAAGTAGATCTAAAAACAAAGTGTACATTGACAACTAGATGTGAAATAAAGGAACCAATATGAGAGGTAGTGAAAACACTAATGACACTCTTAAAGGAGAAACAAAGCAAATAAGGCCAATGCTTCTCTAAATCACATCAAATATGACACTTTAGATCAAATTCATTCCCTGTCAACAAACCTCTGCCACCTTTCAAAGCCATTCATTCTGCATTGAAGTCAACATTTGAACAGATATGACACTATGGCTATGATACCGCCTCGTCATGACTAGTTAAATCCTTGTTGAAATGCCAGTAGAATTAACAACCATTTCCTTCCATGGAGTGAAAATAATTAGCTACTCAAGAGTCAAGACAAGACAATACACCCAGACAACACAATACTACTCTTCACCCATCGTAAAATGTTCATTTTCAAATCATTCAGAACCATTTTCCTACCCCCAAAAAATCTGCTATTGGCTTCTCTTGTGGAACAATTGCTCACCGTACAAATGTAAACTTGGTTTGATTGCACCATAATTTCAGTGTCTGGTTGGTCAAACATTGTGAAGTTACAGCTGAAATAACATCTAAACTGAGCAAGTAATTATTTTGTAAAATGTGAGTTGCCATTAATAGAGCGACATAAAAAGGTATCTTCTAACCACTGTGGTGCATGCATACTGGATCACTTTTACTGTGTCATTCACTCAAAATATAACATCAATGTTCTCTGCACTGTATGCAAACACTGTTCAAATATTTCTATAAAGGTAGCTGAATGTGAACTAAATATAGGGAATGTTAGAATATAGTTGGATGTTCAAAATGGCTGATATCATTAGGCTATGCTATATGTTCATTTTTATGACTACAAAAATGGAAATACTCTACATCTGATCCAATTGCACTTcaataacctacagtatatgggCTTTATTAAAACTGGCCTTGGCACATGAACTTCAGGTAGTAAGACCTGATGGCAGAATGATGTTCTTACAAAACAGTGGTTTCCATGACACCTGAATATCATTACCCACCAGTGgtgataatacacacaactctcacaATATACTTTACTCACAGACCTCTGCACATCAACAGGTGACAAAGGCCTACAATAATTTGTCTAtctttaaaaaagaaaaaaaagaatgcACAAAATTTGAATTGAAaatacggtaccagtcaaaagtttggatacaccttcaagggtttttatttttataacaatagtgaagacatcaatactatgaaataacacatatggaatcatgtagggtaaaaacatttttttttaaatttaaagttaaacaaatgaaatatatatatatataatatgagattcttcaaagtagccaccctttgccttgatgacagatttgcacactcttggcattctctcaaccagcttcacctggaatgctttccaacagtcttgaaggagttccacatatgctgagcacttgttggctgctattccttcactctgcggtcaactcatcccaaaccatctcaattgggttgatgttgggtgattgtggagaccaggtcattggatgcagcactccatcactctccttggtcaaatacccttacacagcctggaggtgtgtttggggtcattgtcctgttgaaaaacaaatgacagtcacactaagcgcaaaccagatgggatggtgtatcgctgcaggatgctgtggtagccatgctagttaagtgtgccttgaattctaagtaaatcacagacagtgtcaacagcaaagcacccccacacctcttccttcatgcttcacggtgggaaccacacataagAAGATCATCCGTTTCCCtattctgtgtctcacaaagacacagcagttggaaccaaaaatctcacatttggactcatcagaccaaaggacagatttcaaccggtctaaagtccattgcttgtgtttcttggcacaagcaagtctcttcttattattggtgtcctttagtagtggtttctttgcagcaattcgacaatgaCTCATGcagtctccactgaacagttgatgctgagatgtgtttgacttgaactctgtgacgcatttatttgggctgcaatctgaggtgcagttaactctaatgaacttatcctctgtagcagaggtaactctgggtcttccttccctgtggcggtcctcatgagagccagtttcatcatagcgcttgatggttttagcACTTGAAGAAAGAAATCAGttattgaaattttccagattgactgaccttcatatcttaaagtaatgatggactgtcagttcactttgcttatttgagctgttcttgccataatatggacttggtcttttaccaaatagggatatcttctctataccccccctaccttgtcacaacacaactgattggctcaaacgcattaaggaaagaaattccacaaattaacttttaacaaggcacacctgttaattgaaatgcaaacCAGTTGACtacctcttgaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtggctactttgaatattctcaaatataaaatatattttgatttcattacatgattgcatatgtgttatttcatagtattgatgtttcactattatttaaaaaataaaaacccttgaatgagtaggtgtggccaaacttttgactggtactatatattttagacctacagtatatgttCATGGGACAttaaaaggtagactcagcgatatgatgtCGAcacagaaagtaaacagcatagtgggtcaatttccacaaCAACTAAGAGCATTGAAGCGCGAGGCTCAACTTCCCCACTGTTTTGGTCCCCTGGCTACCACGCTATAAGAGCGGGAACTGAACCCATGCACATgcacagatactgtgtgtgactgtgtaggAGAACATCTTGCATCTCGCTCATTGCAATATCTACGGTGGCGATGTCatttcgctgagtctacctttaccATATTTAAAATGTTTGATACGTGTGTATCTGGACGGCAGGTACACACATTAATGCATGCCGGCAATTTTAGGAAAAATAACAAATTGTCTCAAGTCTCTATTCACCTCCCTTGGCCATCCCTGGGAAGCAGAGAGACTGTTAAAGGCATGGGGCTCAGTGATGTTCCAAGCATCTTACTGGCACCTCGCTAGCCAGGCTGAAATGgacaatcagcagtagaaacaaaaTAGCAAAGTGTTCTCCTCACCCGTTtcgtaaaaagctgagggattggGCTGGATAAATTTAACCACTCAAATTTATAAACAAGAACaatagatgcaaggactgaccatgcaTGATACCAACATGACAGTTTGAACCATGTTTGAGGCTCTATGAACCATGTTtggaggctatacagtgtttgtttacattgtttacaaacattggagtaaaacaagcttctaTTTTGGGTATTGATGGTggacaacagttgaactaagctatgaggcatttataaattatattcttcaagaatcaatgatcATTAATTTATTATTAATTTAAGTCCAAAAATGAATGTAGCAattgctgattgcccctttaaagacagacacacacacatctggtgAACAGGACTGTAAACCTCCAAACCACCTCCATAGAAAACACGATTCCACCAGGCCTCTTCTGCTCTCAGCTGGGCTGTTCCTTAGCTGGCACTGACCCCCTTCAGTCTAGAACTAGCTACAGCTTTAAAACCAGAAGCCACATAGGCATACTTCCTAATTCCATGTCTCTGCAATGCAGACCCCTCTTAGACCTCATGGATGCATCAGACATACCGCCATCTCATACTTGACCTTCCAAACCAAGGCTTGATTACTACCATTTATATTATATGCAGTAGAAAAATGAAAAAGTTTACAGTTCTCTTTCATTTGAGAGCTTGAAAGTATTCATGATTTATTGTCTGAAACTAATTGaatgtttgattttttttttttctccagcaATGATTCCAACCTCTGACATAACCTGTGCTTCTCTTAGGTTGAGATGGTGAGGGAAAGACAGGTAGaactgtactgtgtttactaaaCTGTGGTTGTTACCATAACAAGCAGCGCTTGTGCCGCCTTTTTCTTGTCAAGGCATTGTGATTTCCCGTGGAAAGTCATGTTCATTAGATATTTAGCTGCCCGACCACAATTCCAGGCCTCCTTCTCTTTTAGAGTTGTAAAGAAGGAAGGTGCTTGGAAACTAACACTGCTGTAAAACTTTCAACCTTCTCAAAATCAACAACTGCAAGCTAATTGGCAAATATCGATATTCCCTTCACATAAAACATCAAGAGCTTGACAGGGAAATCCCTAGGACAGAAGAAAATACATCTCATATTCAAGAACCTTTGCTGTCCACTGCTAACATACCAAGCCAGTGTAGAGTTAATTCCATTACCGTGTCACATGCAAAGTCAGTGATTTTCCTGCTCACCACAGTCAACTCTACAGCTATCTTAAAAAGGGCATTGTTTTTGTACTGTAAAAAGTCTGAGGCATGGGACAGAatttgagagagaaaaatagagaccaagagagagaatgaaagagaccGAGCAAAAGGAGAACTCTCAAAAGTACAGTACAGGAACAATGGGTCTACCCTTCCTTTTGTTTGTCTTTGTAACAGTAGCCTGAGGAGCTCTTATCTGCAGTTAAACCAGGAACTAACCCTCAGGGCCACCTGCGAGCAGACAATTGAAATTGCTTAAACTATTCATTATTTTCTGGTTTTCAAAAAAGGAAAATATCTAACCCCGTTCTGGCACCTGATTGTCTTTCTGTTTTGTTTGTTGGGGGGTGGGTTACTTTAGGTGTCTAGGCAGGAGCTTCTCTTGCTGTCCAGAAGGTCTCTGTAAACAGAGGAGTTGAGGAAACGGGGGTAGGAGTCTCTGTGCATCAGGGTGTAGATCTGCAGCTGGGCTTCCTCGTACATCACGTTGTTAGGCTCCGCCAGGCTCAGGTTGATGCCTTCCCTCACCCGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2151600 True 5397 lncRNA 0.39 2 54358975 54364399

Neighbor

gene id symbol gene type direction distance location
LOC110502978 LOC106610780 coding downstream 76202 54252881 ~ 54282773 (-)
LOC110503071 NA coding downstream 141878 54213257 ~ 54217097 (-)
LOC110503036 LOC106610742 coding downstream 285022 54039018 ~ 54073953 (-)
LOC110502973 abcb10 coding downstream 494413 53858719 ~ 53864562 (-)
LOC100135949 actc1 coding downstream 503939 53851919 ~ 53855036 (-)
LOC110502980 LOC106610792 coding upstream 15018 54379417 ~ 54423946 (-)
LOC110502982 LOC106610932 coding upstream 197543 54561942 ~ 54563802 (-)
LOC110502984 perp coding upstream 270480 54634879 ~ 54647948 (-)
LOC118943819 NA coding upstream 295858 54660257 ~ 54661760 (-)
LOC110502987 cssa01h1orf101 coding upstream 313166 54677565 ~ 54694342 (-)
G1880781 NA non-coding downstream 110254 54248235 ~ 54248721 (-)
G1880780 NA non-coding downstream 113673 54244782 ~ 54246686 (-)
G1880773 NA non-coding downstream 125111 54233573 ~ 54233864 (-)
G1880772 NA non-coding downstream 125496 54233273 ~ 54233479 (-)
G1880763 NA non-coding downstream 140120 54218156 ~ 54218855 (-)
G1880855 NA non-coding upstream 10105 54374504 ~ 54374733 (-)
G1880896 NA non-coding upstream 102439 54466838 ~ 54467494 (-)
G1880897 NA non-coding upstream 103541 54467940 ~ 54468448 (-)
G1880904 NA non-coding upstream 115332 54479731 ~ 54480021 (-)
G1880906 NA non-coding upstream 117412 54481811 ~ 54482043 (-)
G1879406 NA other downstream 1194624 53163242 ~ 53164351 (-)
G1878770 NA other downstream 1715466 52643088 ~ 52643509 (-)
LOC110502957 LOC106610540 other downstream 2043197 52271405 ~ 52315778 (-)
G1881414 NA other upstream 638367 55002766 ~ 55003624 (-)
G1883219 NA other upstream 2241607 56606006 ~ 56610640 (-)
G1883244 NA other upstream 2279608 56644007 ~ 56709888 (-)
LOC110503007 LOC106586972 other upstream 2747734 57071327 ~ 57116725 (-)
LOC110503041 LOC106579580 other upstream 3225645 57590001 ~ 57616121 (-)

Expression


Co-expression Network