Gene
RNA
| Item | Value |
|---|---|
| gene id | G1880937 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048587.1 |
| NCBI id | CM023241.2 |
| chromosome length | 62880378 |
| location | 54542484 ~ 54543543 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: leucine-rich repeat extensin-like protein 3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2151732 | True | 835 | lncRNA | 0.38 | 3 | 54542484 | 54543543 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110502980 | LOC106610792 | coding | downstream | 118538 | 54379417 ~ 54423946 (-) |
| LOC110502978 | LOC106610780 | coding | downstream | 259711 | 54252881 ~ 54282773 (-) |
| LOC110503071 | NA | coding | downstream | 325387 | 54213257 ~ 54217097 (-) |
| LOC110503036 | LOC106610742 | coding | downstream | 468531 | 54039018 ~ 54073953 (-) |
| LOC110502973 | abcb10 | coding | downstream | 677922 | 53858719 ~ 53864562 (-) |
| LOC110502982 | LOC106610932 | coding | upstream | 18399 | 54561942 ~ 54563802 (-) |
| LOC110502984 | perp | coding | upstream | 91336 | 54634879 ~ 54647948 (-) |
| LOC118943819 | NA | coding | upstream | 116714 | 54660257 ~ 54661760 (-) |
| LOC110502987 | cssa01h1orf101 | coding | upstream | 134022 | 54677565 ~ 54694342 (-) |
| LOC110502990 | LOC106610860 | coding | upstream | 212636 | 54756179 ~ 54767665 (-) |
| G1880920 | NA | non-coding | downstream | 24563 | 54516439 ~ 54517921 (-) |
| G1880915 | NA | non-coding | downstream | 41670 | 54500070 ~ 54500814 (-) |
| G1880912 | NA | non-coding | downstream | 47445 | 54494800 ~ 54495039 (-) |
| G1880910 | NA | non-coding | downstream | 49698 | 54492532 ~ 54492786 (-) |
| G1880907 | NA | non-coding | downstream | 60063 | 54482119 ~ 54482421 (-) |
| G1880942 | NA | non-coding | upstream | 7989 | 54551532 ~ 54552979 (-) |
| G1880977 | LOC106610821 | non-coding | upstream | 64451 | 54607994 ~ 54610355 (-) |
| G1881001 | NA | non-coding | upstream | 83901 | 54627444 ~ 54627785 (-) |
| G1881002 | NA | non-coding | upstream | 84516 | 54628059 ~ 54628261 (-) |
| G1881006 | NA | non-coding | upstream | 87812 | 54631355 ~ 54631691 (-) |
| G1880780 | NA | other | downstream | 295798 | 54244782 ~ 54246686 (-) |
| G1879406 | NA | other | downstream | 1378133 | 53163242 ~ 53164351 (-) |
| G1878770 | NA | other | downstream | 1898975 | 52643088 ~ 52643509 (-) |
| LOC110502957 | LOC106610540 | other | downstream | 2226706 | 52271405 ~ 52315778 (-) |
| G1881414 | NA | other | upstream | 459223 | 55002766 ~ 55003624 (-) |
| G1883219 | NA | other | upstream | 2062463 | 56606006 ~ 56610640 (-) |
| G1883244 | NA | other | upstream | 2100464 | 56644007 ~ 56709888 (-) |
| LOC110503007 | LOC106586972 | other | upstream | 2568590 | 57071327 ~ 57116725 (-) |
| LOC110503041 | LOC106579580 | other | upstream | 3046501 | 57590001 ~ 57616121 (-) |
