G1881583 (LOC106610889)


Basic Information

Item Value
gene id G1881583
gene name LOC106610889
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 55142872 ~ 55143317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2152495
CATGCGcctggcctcctcctcctcagggtTGCGGTTCTCCAACTCGATGGTGTAGGTTCCCTTATCACTCTGGTCATCCTCCtgctccctgtccctgtccccctgAGACCGAGGGGTCCTCAGACCCTCCTCACTGGGGCTGGGCTCAGTGGTCTGGTGGCCTGTACTGACCGAGCTCCTCCCTATGCTCTGGTCCTCAGACCTCTGCTTCATCAGAACTCGGGCGGCAGTGGGGGCTCCCGCTATCAGGGCAGCTGATAACGGGGCCTTACTGAAGTCTGTGGTCATGGTGGAAGGGGCCTTAgagtgggaggggggggtggggCAAAGAGCCTCCCTGGCCGCACCCCCAAGCAGCGGTGCAGTCTGTGAGAAGGAGTAGGAGCGTCGCTTGCGGGGGTTGTCATCATTGTAGAATTCGATCATGAAGGTAGTCCTGTTGCCGG

Function

NR:

description
centrosomal protein of 170 kDa-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2152495 True 446 lncRNA 0.61 1 55142872 55143317

Neighbor

gene id symbol gene type direction distance location
LOC110502991 NA coding downstream 71726 55068829 ~ 55071146 (-)
LOC110502990 LOC106610860 coding downstream 375207 54756179 ~ 54767665 (-)
LOC110502987 cssa01h1orf101 coding downstream 448530 54677565 ~ 54694342 (-)
LOC118943819 NA coding downstream 481112 54660257 ~ 54661760 (-)
LOC110502984 perp coding downstream 494924 54634879 ~ 54647948 (-)
LOC110502996 LOC107666370 coding upstream 47153 55190470 ~ 55204193 (-)
LOC110502998 LOC106610959 coding upstream 837950 55981267 ~ 55984852 (-)
LOC110503038 NA coding upstream 901014 56044331 ~ 56059595 (-)
LOC110503002 LOC106610976 coding upstream 1616762 56760079 ~ 56780244 (-)
LOC110503005 LOC106611007 coding upstream 1713263 56856580 ~ 56886643 (-)
G1881581 NA non-coding downstream 2899 55139665 ~ 55139973 (-)
G1881580 NA non-coding downstream 3821 55138668 ~ 55139051 (-)
G1881579 NA non-coding downstream 5481 55137093 ~ 55137391 (-)
G1881578 NA non-coding downstream 6216 55136371 ~ 55136656 (-)
G1881577 LOC106610889 non-coding downstream 6839 55135577 ~ 55136033 (-)
G1881585 NA non-coding upstream 1986 55145303 ~ 55145566 (-)
G1881601 LOC106610889 non-coding upstream 24265 55167582 ~ 55169458 (-)
G1881609 NA non-coding upstream 37776 55181093 ~ 55184554 (-)
G1881644 NA non-coding upstream 78811 55222128 ~ 55222480 (-)
G1881650 NA non-coding upstream 90696 55234013 ~ 55234224 (-)
G1881414 NA other downstream 139248 55002766 ~ 55003624 (-)
G1880780 NA other downstream 896186 54244782 ~ 54246686 (-)
LOC110503036 LOC106610742 other downstream 1068923 54039018 ~ 54073953 (-)
G1879406 NA other downstream 1978521 53163242 ~ 53164351 (-)
G1878770 NA other downstream 2499363 52643088 ~ 52643509 (-)
G1883219 NA other upstream 1462689 56606006 ~ 56610640 (-)
G1883244 NA other upstream 1500690 56644007 ~ 56709888 (-)
LOC110503007 LOC106586972 other upstream 1968816 57071327 ~ 57116725 (-)
LOC110503041 LOC106579580 other upstream 2446727 57590001 ~ 57616121 (-)
G1884227 NA other upstream 2591040 57734357 ~ 57735498 (-)

Expression


Co-expression Network