G1881601 (LOC106610889)


Basic Information

Item Value
gene id G1881601
gene name LOC106610889
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 55167582 ~ 55169458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2152517
aataaaatggtggTTTATACAAAACATGAAAAAGAAAAGTAAAACACTTATAAGATGTGTAAACtttcaaaataacaaaataagTGTACCGAGCACTTCAGTATTCCCATCACTTTCTTTCTTTAATGTAATATACTGACACACATGATGGTGTGCAGAGGATAGGTACAGAGGCATCTCATTCTGATATCAGCTGTTCCATTTAGGTATTTGGTTTTGTCCTTCTGAATCCTAAAACCACTGACGGTGACACTTGAAGAGCCTTTGACACATTTGACAAATTATACCATTTCATTCCACTCTTGATGATTCCTCATCTTAAAAAACATTATGCCATTTTACTATTCAAACTGGGCACTTAGTGACATCAAAGTCTGTATATGAAGCAGAAAAGATGGAGCATGTTTTCTGGTACCTAACTTCACTATTGCTTAAGTATCTAAATACGGTTGCACGATCTTGAATACATTTTATACGACGACACATAACTTTACATGAAAGGCTTGTAAAATGGTCAGGCTAACCCTCCAAAAGGGAACTGAAGAGAAGCAGCAAACGCAGTGAGGATGTCaagtctatacacacacactgtatgagTACACGACAACATCCTCCCTTATGGAAATGTAGAATAGCGAGTGATTCAATGTCAGTAAAAGGCTTGCTACAGTCTTATGATCATCATTCATATATGTAGTAATGACAGTGGTTATAGCTAATGAAGCTTTGACGGTAACTTCTGTCTTTAATGACAGTGGTTACAGCTTCTGAAGCTTTGACGGTAACCTTGTTGCAGTCATGTTGTTTCATACAATTTCAAAGACCAATTTAAAGACCTTGTAAATCAACACTAAACAGACAGAGGTCCTCTTGGTAGAAGACCAACCTGCTCTCTCCAACAAAGGCCATTCAGGGTGTACATCTGGTACACCACTATGGACTCATGTTACTGTataaaatactacagtaaagagTAGGGATTCAGAACAGTCCAAGATGAAAAAGATCCGGTCAatgtcacatttttgttttcacttCCAGTTTACAAAGATACCGCATAGTCATAACAGGAAATATATCAAGTAATGCAAATCATATGAAATACGTCATTCAGGTCAAGGACCAGGCTTAAGGGCTCTAATCAATGTTTGCGCCGCGTTCCAAAAATGAATGGTTTAGGCTACATACAAgcattactgtactgtaacataGTTTAACATGGTACTGTAACAGTCTTAAATCGTTTCAAACACTAAAAACATTTTTTCATGTGAAATGCATTTCACCATAACAATGTATAAGATTCTCTGGGTACAGAATTGTTCAGAGAAGTTGAAATTCAGTATTTTAGACAAATGTGCAGAAAATAGATAGAAAACAGATTACCAGCAAAACAGATAAATTACCATTCAAAATACAATAAGAAACATTTTGAGTTTGCTCCACTGTACACTTATTTCAAACTTGGCTCACATAAAAAACCTCTTTACTGTTAGCTTTGGTAGGTTACTAGGGTGGTGGAGGTTCATTCTGAAATATTCCCGAAAGAGGGCAAATTGTTCTTTGAGGCAGGTGTTCTATATATGACGCATCAGAGGGTGGGAACCTCCTCACTTCTGAGTGATGGCACTCTCTTCTCCACTGGGGTGGATGCGGTTGAAGTGCAGGCTTCCCAGGTCTCTGGCTGACACAGACCCTGACCCCTCAGTGGGTGCCGAGGAGGCGGTGTAGCCCCTGGCTGCAGGTCCTGGGAGGGTCTTCTGGGGCCCCTGAGAACCAGGAGAGGGCTTGGGTGTAAGGGGGCTGGTCAGGTCAAGGCTGCTCAGGGCATCCAGGGTGCCTTCAGGATCCACCATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2152517 True 1857 lncRNA 0.40 2 55167582 55169458

Neighbor

gene id symbol gene type direction distance location
LOC110502991 NA coding downstream 96436 55068829 ~ 55071146 (-)
LOC110502990 LOC106610860 coding downstream 399917 54756179 ~ 54767665 (-)
LOC110502987 cssa01h1orf101 coding downstream 473240 54677565 ~ 54694342 (-)
LOC118943819 NA coding downstream 505822 54660257 ~ 54661760 (-)
LOC110502984 perp coding downstream 519634 54634879 ~ 54647948 (-)
LOC110502996 LOC107666370 coding upstream 21012 55190470 ~ 55204193 (-)
LOC110502998 LOC106610959 coding upstream 811809 55981267 ~ 55984852 (-)
LOC110503038 NA coding upstream 874873 56044331 ~ 56059595 (-)
LOC110503002 LOC106610976 coding upstream 1590621 56760079 ~ 56780244 (-)
LOC110503005 LOC106611007 coding upstream 1687122 56856580 ~ 56886643 (-)
G1881585 NA non-coding downstream 22016 55145303 ~ 55145566 (-)
G1881583 LOC106610889 non-coding downstream 24265 55142872 ~ 55143317 (-)
G1881581 NA non-coding downstream 27609 55139665 ~ 55139973 (-)
G1881580 NA non-coding downstream 28531 55138668 ~ 55139051 (-)
G1881579 NA non-coding downstream 30191 55137093 ~ 55137391 (-)
G1881609 NA non-coding upstream 11635 55181093 ~ 55184554 (-)
G1881644 NA non-coding upstream 52670 55222128 ~ 55222480 (-)
G1881650 NA non-coding upstream 64555 55234013 ~ 55234224 (-)
G1881697 NA non-coding upstream 114360 55283818 ~ 55284155 (-)
G1881726 NA non-coding upstream 136254 55305712 ~ 55305992 (-)
G1881414 NA other downstream 163958 55002766 ~ 55003624 (-)
G1880780 NA other downstream 920896 54244782 ~ 54246686 (-)
LOC110503036 LOC106610742 other downstream 1093633 54039018 ~ 54073953 (-)
G1879406 NA other downstream 2003231 53163242 ~ 53164351 (-)
G1878770 NA other downstream 2524073 52643088 ~ 52643509 (-)
G1883219 NA other upstream 1436548 56606006 ~ 56610640 (-)
G1883244 NA other upstream 1474549 56644007 ~ 56709888 (-)
LOC110503007 LOC106586972 other upstream 1942675 57071327 ~ 57116725 (-)
LOC110503041 LOC106579580 other upstream 2420586 57590001 ~ 57616121 (-)
G1884227 NA other upstream 2564899 57734357 ~ 57735498 (-)

Expression


Co-expression Network