G1881609


Basic Information

Item Value
gene id G1881609
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 55181093 ~ 55184554 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2152528
CAGGTGTCTGCCATGGCTGAAGTCAGTACGGTTTATTAAATGACTGGACAGGTGTCTGCCATGGCTGAAGTCAGTACGGTTTATTAAATGACTAGACAGGTGTCTGCCATGGCTGAAGTCTGTACGGTTTATTAAATGACTGGACAGGTGTCTGCCATGGCTGAAGTCAGTACGGTTTATTAAATGACTGGACAGGTGTCTGCCATGGCTGAAGTCTGTCTGTGCTTTAGAACATTCTGTTCTTTTGATCTCATTGGCTGAGAGAGCTGATGAGTCCATTAAGTTAGGTCTCCAGTTCCAGGCCTTTCCAAGACTTGGACGCATTTCTCTTGTACT
>TU2152530
CAGGTGTCTGCCATGGCTGAAGTCAGTACGGTTTATTAAATGACTGGACAGGTGTCTGCCATGGCTGAAGTCAGTACGGTTTATTAAATGACTAGACAGGTGTCTGCCATGGCTGAAGTCAGTACGGTTTATTAAATGACTAGACAGGTGTCTGCCATGGCTGAAGTCTGTACGGTTTATTAAATGACTGGACAGGTGTCTGCCATGGCTGAAGTCAGTACGGTTTATTAAATGACTGGACAGGTGTCTGCCATGGCTGAAGTCTGTCTGTGCTTTAGAACATTCTGTTCTTTTGATCTCATTGGCTGAGAGAGCTGATGAGTCCATTAAGTTAGGTCTCCAGTTCCAGGCCTTTCCAAGACTTGGACGCATTTCTCTTGTACT
>TU2152531
AGTCTGTACGGTTTATTAAATGACTGGACAGGTGTCTGCCATGGCTGAAGTCAGTACGGTTTATTAAATGACTGGACAGGTGTCTGCCATGGCTGAAGTCTGTCTGTGCTTTAGAACATTCTGTTCTTTTGATCTCATTGGCTGAGAGAGCTGATGAGTCCATTAAGTTAGGTCTCCAGTTCCAGGCCTTTCCAAGACTTGGACGCATTTCTCTTGTACT
>TU2152532
CAGGTGTCTGCCATGGCTGAAGTCAGTACGGTTTATTAAATGACTGGACAGGTGTCTGCCATGGCTGAAGTCAGTACGGTTTATTAAATGACTAGACAGGTGTCTGCCATGGCTGAAGTCAGTACGGTTTATTAAATGACTAGACAGGTGTCTGCCATGGCTGAAGTCTGTACGGTTTATTAAATGACTGGACAGGTGTCTGCCATGGCTGAAGTCAGTACAGTTTATTAAATGACTGAACAGGAGGTGTCTGCCATGGCTGAAGTCTGTATGGTTTATTAATTGACTCGACAGGAGTCTGCCATGGCTGAAGTCTGTACGGTTTATTAAATGACTAGACAGGTGTCTGCCATGGCTGAAGTCTGTACGGTTTATTAAATGACTGGACAGGTGTCTGCCATGGCTGAAGTCAGTACGGTTTATTAAATGACTGGACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106586862

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2152528 False 336 lncRNA 0.46 2 55181093 55182919
TU2152530 False 384 lncRNA 0.45 3 55181093 55184554
TU2152531 False 220 lncRNA 0.45 2 55181093 55184438
TU2152532 True 437 lncRNA 0.45 3 55182243 55184554

Neighbor

gene id symbol gene type direction distance location
LOC110502991 NA coding downstream 109947 55068829 ~ 55071146 (-)
LOC110502990 LOC106610860 coding downstream 413428 54756179 ~ 54767665 (-)
LOC110502987 cssa01h1orf101 coding downstream 486751 54677565 ~ 54694342 (-)
LOC118943819 NA coding downstream 519333 54660257 ~ 54661760 (-)
LOC110502984 perp coding downstream 533145 54634879 ~ 54647948 (-)
LOC110502996 LOC107666370 coding upstream 5916 55190470 ~ 55204193 (-)
LOC110502998 LOC106610959 coding upstream 796713 55981267 ~ 55984852 (-)
LOC110503038 NA coding upstream 859777 56044331 ~ 56059595 (-)
LOC110503002 LOC106610976 coding upstream 1575525 56760079 ~ 56780244 (-)
LOC110503005 LOC106611007 coding upstream 1672026 56856580 ~ 56886643 (-)
G1881601 LOC106610889 non-coding downstream 11635 55167582 ~ 55169458 (-)
G1881585 NA non-coding downstream 35527 55145303 ~ 55145566 (-)
G1881583 LOC106610889 non-coding downstream 37776 55142872 ~ 55143317 (-)
G1881581 NA non-coding downstream 41120 55139665 ~ 55139973 (-)
G1881580 NA non-coding downstream 42042 55138668 ~ 55139051 (-)
G1881644 NA non-coding upstream 37574 55222128 ~ 55222480 (-)
G1881650 NA non-coding upstream 49459 55234013 ~ 55234224 (-)
G1881697 NA non-coding upstream 99264 55283818 ~ 55284155 (-)
G1881726 NA non-coding upstream 121158 55305712 ~ 55305992 (-)
G1881773 NA non-coding upstream 162537 55347091 ~ 55352670 (-)
G1881414 NA other downstream 177469 55002766 ~ 55003624 (-)
G1880780 NA other downstream 934407 54244782 ~ 54246686 (-)
LOC110503036 LOC106610742 other downstream 1107144 54039018 ~ 54073953 (-)
G1879406 NA other downstream 2016742 53163242 ~ 53164351 (-)
G1878770 NA other downstream 2537584 52643088 ~ 52643509 (-)
G1883219 NA other upstream 1421452 56606006 ~ 56610640 (-)
G1883244 NA other upstream 1459453 56644007 ~ 56709888 (-)
LOC110503007 LOC106586972 other upstream 1927579 57071327 ~ 57116725 (-)
LOC110503041 LOC106579580 other upstream 2405490 57590001 ~ 57616121 (-)
G1884227 NA other upstream 2549803 57734357 ~ 57735498 (-)

Expression


Co-expression Network