G1883403


Basic Information

Item Value
gene id G1883403
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 56897082 ~ 56897577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2154563
CCATGCAGCATCTTCTTGGCTTGAAACAAAGTGTATTGCATAAACACTGGAATCGATTTGTCCTTACTCCAAACATACGCTCTACCATCCCTCTCATTGTATATGAGCTCTGTTGTATCTTTGCTGCTCAGCTGTCGTGAGATTTATGTATGGAGTGAATAAAAAGTTACTCTGAACATATTCACTGTCACCAAGTTGTAGTCCACTATGTTGTCCTCTCTGAAACTGAGCACACAATGAAGAGTTGAGAAAAATCCTTGAATCATGAGTTGCACCTTTCCAAAGGGCAACAATGTTTGAAACCTCTAAATTAGGAGTGCATACACCCTGAACATTGATGGAAAACCAGTTCTTACGGTTCCTGTACTCCTCAGCATCAGGAGTTGATGGACACTTGATGGGAACATGACATCCATCTATACAGCCAATCCCTCCTGGGAAGTGACCATATTCATAGAATTACACTCTATAGTTGGCTTGGCCAGCAGCATCAGGA

Function

NR:

description
putative nuclease HARBI1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2154563 True 496 lncRNA 0.42 1 56897082 56897577

Neighbor

gene id symbol gene type direction distance location
LOC110503004 LOC106611018 coding upstream 53607 56829056 ~ 56843475 (+)
LOC110503003 LOC106611055 coding upstream 68350 56812404 ~ 56828732 (+)
LOC118943924 NA coding upstream 187116 56701366 ~ 56709966 (+)
LOC110503001 LOC106611028 coding upstream 196098 56613066 ~ 56727194 (+)
LOC110503000 prkce coding upstream 286324 56311640 ~ 56610758 (+)
LOC118943926 NA coding downstream 481552 57379129 ~ 57399437 (+)
LOC110503012 LOC106611138 coding downstream 602117 57499694 ~ 57540368 (+)
LOC110503013 NA coding downstream 647698 57545275 ~ 57550796 (+)
LOC110503040 LOC106579579 coding downstream 673169 57570746 ~ 57588495 (+)
LOC118943835 NA coding downstream 1967038 58864615 ~ 58865931 (+)
G1882902 NA non-coding upstream 131427 56728623 ~ 56765655 (+)
G1882901 NA non-coding upstream 168616 56728250 ~ 56728466 (+)
G1882891 NA non-coding upstream 201927 56694766 ~ 56695155 (+)
G1882884 NA non-coding upstream 224138 56672561 ~ 56672944 (+)
G1883408 NA non-coding downstream 4580 56902157 ~ 56903028 (+)
G1883412 NA non-coding downstream 26730 56924307 ~ 56935226 (+)
G1883413 NA non-coding downstream 33701 56931278 ~ 56932341 (+)
G1883414 NA non-coding downstream 37854 56935431 ~ 56935773 (+)
G1883423 LOC106610997 non-coding downstream 50087 56947664 ~ 56956691 (+)
G1882831 NA other upstream 353826 56533617 ~ 56543256 (+)
G1882830 NA other upstream 358599 56529795 ~ 56538483 (+)
G1881371 NA other upstream 1893410 55002782 ~ 55003672 (+)
G1879958 NA other upstream 3041352 53851671 ~ 53855730 (+)
G1883457 NA other downstream 114460 57012037 ~ 57013218 (+)
G1885587 NA other downstream 1964637 58862214 ~ 58864502 (+)
G1886557 NA other downstream 2826687 59724264 ~ 59736661 (+)
G1886558 NA other downstream 2830169 59727746 ~ 59736471 (+)
G1886560 NA other downstream 2852141 59749718 ~ 59786095 (+)

Expression


Co-expression Network