G1883408


Basic Information

Item Value
gene id G1883408
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 56902157 ~ 56903028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2154568
GcttaaacatcaaacatatagaCAGTAGTTTATCTAATACAGCATCCTAATGTGTGATATAGGTGAAacgacatagaaatacaaaactaAACCATCACAGTTAAAATACATGTAAAGTGTTTACCTCTCTGCTAATATGATTAGATAACTAAATCAGGTGCAGAGGAGACGGTGAATGTGTACAGTATTTGCCATGCCAGTGAAAGGAAGGAGTGACATTAAAATATAGGGTGTATTTCTaacaaatcaaccaatcaaagATCAATGCAGCATGATTGAGATAGACCTAAGCCATCATAGTGAGCACAGTAAAGTGTTTTAGCCTTTTAGTCGGGTAACAGAGCACTGCACAAACTGGCTTTCAAAAGCTATACTTAATTtcgggctctattcaatctgcgGAAGTTCAGCCTTCCCGCATTACGGCCCGTTTATACTAGCAAGTAGCATCGCGCAGTGGAAAACCGGAAGCCATTAACTTTCAATGGAATGAAGTGGAATGGGCGGGAGGACCGCTGAGTGATGCGAGCATGGGCGAGGGAGCTGAAGTTTGGGAAAGACAAACCTATTCAAATCCTCTGCGAAATCGCAACGCGGGTGACCAATCAAAGCTCACCATTAGCTTCCACTCCTACTGGATTGGCTGACAATGGCTGTTGATACGTACCACTACATAGCTTGCTTGCAAGCTTGTTAGAACGCACACGAGTGCGATGGTAGCGTGGCTAGGCAAGTGACGCTTGTGTAGTATAAATCCTCTGTTAGTTGAaactgcattcatggtaaacacTGCATATATTGACTTAatcagaaattacctttacatttctatggAGCAAACTGTAACGCTTCAGCGACACAGACTGAATGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2154568 True 872 lncRNA 0.42 1 56902157 56903028

Neighbor

gene id symbol gene type direction distance location
LOC110503004 LOC106611018 coding upstream 58682 56829056 ~ 56843475 (+)
LOC110503003 LOC106611055 coding upstream 73425 56812404 ~ 56828732 (+)
LOC118943924 NA coding upstream 192191 56701366 ~ 56709966 (+)
LOC110503001 LOC106611028 coding upstream 201173 56613066 ~ 56727194 (+)
LOC110503000 prkce coding upstream 291399 56311640 ~ 56610758 (+)
LOC118943926 NA coding downstream 476101 57379129 ~ 57399437 (+)
LOC110503012 LOC106611138 coding downstream 596666 57499694 ~ 57540368 (+)
LOC110503013 NA coding downstream 642247 57545275 ~ 57550796 (+)
LOC110503040 LOC106579579 coding downstream 667718 57570746 ~ 57588495 (+)
LOC118943835 NA coding downstream 1961587 58864615 ~ 58865931 (+)
G1883403 NA non-coding upstream 4580 56897082 ~ 56897577 (+)
G1882902 NA non-coding upstream 136502 56728623 ~ 56765655 (+)
G1882901 NA non-coding upstream 173691 56728250 ~ 56728466 (+)
G1882891 NA non-coding upstream 207002 56694766 ~ 56695155 (+)
G1883412 NA non-coding downstream 21279 56924307 ~ 56935226 (+)
G1883413 NA non-coding downstream 28250 56931278 ~ 56932341 (+)
G1883414 NA non-coding downstream 32403 56935431 ~ 56935773 (+)
G1883423 LOC106610997 non-coding downstream 44636 56947664 ~ 56956691 (+)
G1883453 NA non-coding downstream 101049 57004077 ~ 57004677 (+)
G1882831 NA other upstream 358901 56533617 ~ 56543256 (+)
G1882830 NA other upstream 363674 56529795 ~ 56538483 (+)
G1881371 NA other upstream 1898485 55002782 ~ 55003672 (+)
G1879958 NA other upstream 3046427 53851671 ~ 53855730 (+)
G1883457 NA other downstream 109009 57012037 ~ 57013218 (+)
G1885587 NA other downstream 1959186 58862214 ~ 58864502 (+)
G1886557 NA other downstream 2821236 59724264 ~ 59736661 (+)
G1886558 NA other downstream 2824718 59727746 ~ 59736471 (+)
G1886560 NA other downstream 2846690 59749718 ~ 59786095 (+)

Expression


Co-expression Network