G1883460


Basic Information

Item Value
gene id G1883460
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 57015726 ~ 57016552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2154626
CCAGTAACCactcagagtcagacagacaggagtgTTACTGGCTGACCAGTAACCACTCAGAGTCAGACAGGAGTGTTACTGGCTGACCAGTAACCactcagagtcagacagacaggagtgTTACTGGCTGACCAGTAACCactcagagtcagacagacaggagtgTTACTGGCTGACCAGTAACCACTCAGACTCAGACAGAAAGGAGTGTTACTGGCTGACCAGTAACCACTCAGAGTCAGACAGGAGTGTTACTGGCTGACCAGTAACCACTCAGACTCAGACAGACAGGAGTGTTACTGGCTGACCAGTAACCATTCAGAGTCAGACAGAAAGGAGTGTTACTGGCTGACCAGTAACCactcagagtcagacagacaggagtgTTACTGGCTGACCAGTAACCactcagagtcagacagacaggagtgTTACTGGCTGACCAGTAACCACTCAGACTCAGACAGAAAGGAGTGTTACTGGCTGATCAGTAACCactcagagtcagacagacaggagtgTTACTGGCTGACCAGTAACCactcagagtcagacagacaggagtgTTACTGGCTGACCAGTAACCattcagagtcagacagacaagaGTGTTACTGGCTGACCAGTAACCACTCAGACTCAGACAGACAGGAGTGTTACTGGCTGACCAGTAACCactcagagtcagacagacaggagtgTTACTGGCTGACCAGTAACCACTCAGAGTCagacagaaaggaGTGTTACTGGCTGactcagagtcagac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106588130

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2154626 True 770 lncRNA 0.50 2 57015726 57016552
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110503004 LOC106611018 coding upstream 172251 56829056 ~ 56843475 (+)
LOC110503003 LOC106611055 coding upstream 186994 56812404 ~ 56828732 (+)
LOC118943924 NA coding upstream 305760 56701366 ~ 56709966 (+)
LOC110503001 LOC106611028 coding upstream 314742 56613066 ~ 56727194 (+)
LOC110503000 prkce coding upstream 404968 56311640 ~ 56610758 (+)
LOC118943926 NA coding downstream 362577 57379129 ~ 57399437 (+)
LOC110503012 LOC106611138 coding downstream 483142 57499694 ~ 57540368 (+)
LOC110503013 NA coding downstream 528723 57545275 ~ 57550796 (+)
LOC110503040 LOC106579579 coding downstream 554194 57570746 ~ 57588495 (+)
LOC118943835 NA coding downstream 1848063 58864615 ~ 58865931 (+)
G1883453 NA non-coding upstream 11049 57004077 ~ 57004677 (+)
G1883423 LOC106610997 non-coding upstream 59035 56947664 ~ 56956691 (+)
G1883414 NA non-coding upstream 79953 56935431 ~ 56935773 (+)
G1883412 NA non-coding upstream 80500 56924307 ~ 56935226 (+)
G1883413 NA non-coding upstream 83385 56931278 ~ 56932341 (+)
G1883465 NA non-coding downstream 5669 57022221 ~ 57054805 (+)
G1883482 NA non-coding downstream 41818 57058370 ~ 57058976 (+)
G1883486 NA non-coding downstream 48213 57064765 ~ 57065085 (+)
G1883487 NA non-coding downstream 50997 57067549 ~ 57068011 (+)
G1883488 NA non-coding downstream 51900 57068452 ~ 57068709 (+)
G1883457 NA other upstream 2508 57012037 ~ 57013218 (+)
G1882831 NA other upstream 472470 56533617 ~ 56543256 (+)
G1882830 NA other upstream 477243 56529795 ~ 56538483 (+)
G1881371 NA other upstream 2012054 55002782 ~ 55003672 (+)
G1885587 NA other downstream 1845662 58862214 ~ 58864502 (+)
G1886557 NA other downstream 2707712 59724264 ~ 59736661 (+)
G1886558 NA other downstream 2711194 59727746 ~ 59736471 (+)
G1886560 NA other downstream 2733166 59749718 ~ 59786095 (+)
G1886561 NA other downstream 2767434 59783986 ~ 59787989 (+)

Expression

G1883460 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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G1883460 Expression in each Bioproject

Bar chart with 8 bars.
G1883460 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network