G1884215


Basic Information

Item Value
gene id G1884215
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 57705400 ~ 57720592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2155480
gtgtagagggagacattagacattctgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattaggcagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtcttgtgtagagggagacataagacagtatgtggtgtagagagagacattagacagtatgtggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtagtgtagaaggagacattagacagtatgtggtgtagagagagacattagacagtatgtagtgtagagggagacattagacagtctgtggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagatggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagagagagacattagacagtctggtgtagagggagacattagacagtctgtggtgtagagggagacattagacagtctggtgtagagggagacattagacattctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctgtagtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagatggagacattagacagtctgtggtgtagagggagacattagacagtatgtggtgtagatggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagatgtagacattagacagtctggtgtagagggagacat
>TU2155479
cagtctggtgtagatggagacattagacagtctgtggtgtagagggagacattagacattctggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagatggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctgtggtgtagagggagacattagacagtctggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattaggcagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtcttgtgtagagggagacataagacagtatgtggtgtagagagagacattagacagtatgtggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtagtgtagaaggagacattagacagtatgtggtgtagagagagacattagacagtatgtagtgtagagggagacattagacagtctgtggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagatggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattaggcagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtcttgtgtagagggagacataagacagtatgtggtgtagagagagacattagacagtatgtagtgtagagggagacattagacattctgtggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtagtgtagaaggagacattagacagtatgtggtgtagagagagacattagacagtatgtagtgtagagggagacattagacagtctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagatggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctgtggtgtagatggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtcttgtgtagagggagacattagacagtatgtggtgtagagagagacattagacagtatgtagtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgt

Function

NR:

description
uncharacterized protein LOC110014009

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2155480 False 1258 lncRNA 0.45 4 57705400 57713179
TU2155479 True 2069 lncRNA 0.45 3 57707329 57720592

Neighbor

gene id symbol gene type direction distance location
LOC110503041 LOC106579580 coding downstream 89279 57590001 ~ 57616121 (-)
LOC110503011 LOC106611131 coding downstream 271944 57389610 ~ 57433456 (-)
LOC110503010 LOC106590975 coding downstream 323749 57339527 ~ 57381651 (-)
LOC110503007 LOC106586972 coding downstream 588675 57071327 ~ 57116725 (-)
LOC110503044 nrxn1 coding upstream 308066 58028658 ~ 58767213 (-)
gpr75 gpr75 coding upstream 1625991 59346393 ~ 59351909 (-)
LOC110503043 LOC106611227 coding upstream 1635215 59355807 ~ 59454278 (-)
LOC118943927 NA coding upstream 1743579 59464171 ~ 59466881 (-)
LOC110503014 LOC106611248 coding upstream 2146388 59866980 ~ 59948191 (-)
G1884195 NA non-coding downstream 12267 57692880 ~ 57693133 (-)
G1884154 NA non-coding downstream 54772 57650267 ~ 57650628 (-)
G1884136 NA non-coding downstream 72183 57632865 ~ 57633217 (-)
G1884132 NA non-coding downstream 75869 57627007 ~ 57629531 (-)
G1884129 NA non-coding downstream 79490 57625505 ~ 57625910 (-)
G1884223 NA non-coding upstream 9260 57729852 ~ 57730072 (-)
G1884228 NA non-coding upstream 16071 57736663 ~ 57737105 (-)
G1884239 NA non-coding upstream 21283 57741875 ~ 57742106 (-)
G1884321 NA non-coding upstream 24512 57745104 ~ 57789252 (-)
G1884352 NA non-coding upstream 64154 57784746 ~ 57785245 (-)
G1883244 NA other downstream 995512 56644007 ~ 56709888 (-)
G1883219 NA other downstream 1094760 56606006 ~ 56610640 (-)
G1881414 NA other downstream 2701776 55002766 ~ 55003624 (-)
G1884227 NA other upstream 13765 57734357 ~ 57735498 (-)
G1885150 NA other upstream 513627 58234219 ~ 58242567 (-)
G1885863 NA other upstream 1369081 59089673 ~ 59090564 (-)
G1886825 NA other upstream 2245770 59966362 ~ 59966666 (-)

Expression


Co-expression Network