G1886166 (LOC106584099)


Basic Information

Item Value
gene id G1886166
gene name LOC106584099
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 59332190 ~ 59332703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2157581
cccctggtgacaGAAAagcgcaactcgtcagtgaagacgtcctgtctggtccatcgacggtgggtttgtgcccataggtgatgttgttgctggtgatgtctggtaaggacctgccttacaacaggcctataagccctcagtccagcctctctcagcctattgtggacagtctgagcactgatggagggattgtgcattcctggtgtaactcgggcagttgttgttgccatcctgtacctgtcccactggtgtgatgttcggatgtaccgatcctgtgcaggtgttgttatacgtggtctgccactgcgaggacgatcagctgtccgtcctgtctccctgtagcgctgtcttaggggtctcacagtatggacattgcaatttattgccctggctacatctgcagtcctcatgcctccttgcagcatgcctaaggcacgttcacgcagatgagcagggaccctgggcatctttctttgggtgtttttcaaagtcagtaggaaggcctctttagtgt

Function

NR:

description
PREDICTED: uncharacterized protein LOC106584099, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2157581 True 514 lncRNA 0.53 1 59332190 59332703

Neighbor

gene id symbol gene type direction distance location
LOC118943835 NA coding upstream 466259 58864615 ~ 58865931 (+)
LOC110503040 LOC106579579 coding upstream 1743695 57570746 ~ 57588495 (+)
LOC110503013 NA coding upstream 1781394 57545275 ~ 57550796 (+)
LOC110503012 LOC106611138 coding upstream 1791822 57499694 ~ 57540368 (+)
LOC118943926 NA coding upstream 1932753 57379129 ~ 57399437 (+)
LOC110503019 LOC106611219 coding downstream 3760 59336463 ~ 59345077 (+)
LOC118943836 NA coding downstream 248396 59581099 ~ 59581875 (+)
LOC110503016 LOC106611257 coding downstream 370691 59703394 ~ 59816421 (+)
LOC110503015 LOC106589751 coding downstream 514408 59847111 ~ 59866775 (+)
LOC110503042 kcnk1 coding downstream 629512 59962215 ~ 59972534 (+)
G1886161 NA non-coding upstream 4568 59326878 ~ 59327622 (+)
G1886154 NA non-coding upstream 13251 59318710 ~ 59318939 (+)
G1886144 NA non-coding upstream 22374 59309325 ~ 59309816 (+)
G1886133 NA non-coding upstream 34763 59296927 ~ 59297427 (+)
G1886122 NA non-coding upstream 45069 59286670 ~ 59287121 (+)
G1886168 NA non-coding downstream 1397 59334100 ~ 59334334 (+)
G1886172 NA non-coding downstream 12976 59345679 ~ 59347888 (+)
G1886176 NA non-coding downstream 19760 59352463 ~ 59365283 (+)
G1886178 NA non-coding downstream 21920 59354623 ~ 59357296 (+)
G1886187 NA non-coding downstream 35702 59368405 ~ 59368771 (+)
G1885587 NA other upstream 467688 58862214 ~ 58864502 (+)
G1883457 NA other upstream 2318972 57012037 ~ 57013218 (+)
LOC110503001 LOC106611028 other upstream 2604996 56613066 ~ 56727194 (+)
G1882831 NA other upstream 2788934 56533617 ~ 56543256 (+)
G1882830 NA other upstream 2793707 56529795 ~ 56538483 (+)
G1886557 NA other downstream 391561 59724264 ~ 59736661 (+)
G1886558 NA other downstream 395043 59727746 ~ 59736471 (+)
G1886560 NA other downstream 417015 59749718 ~ 59786095 (+)
G1886561 NA other downstream 451283 59783986 ~ 59787989 (+)
slc35f3b slc35f3 other downstream 837645 60012705 ~ 60174129 (+)

Expression

G1886166(LOC106584099) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G1886166(LOC106584099) Expression in each Bioproject

Bar chart with 21 bars.
G1886166(LOC106584099) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network