G1886548


Basic Information

Item Value
gene id G1886548
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 59699848 ~ 59700061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2158053
tcatagtacagggtttaaacactgtttaccatgcttgttcaatgaaccataagcaattaatgaacatgtacctgtggaacagtcgttaagacattaacagcttacagatggtagccaattaaggtcacagttatgaaaacttaggacactaaggaggcctttctactgactctgaaaaacaccaaaataaagatgcccagggaccctgctcatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2158053 True 214 lncRNA 0.40 1 59699848 59700061

Neighbor

gene id symbol gene type direction distance location
LOC118943836 NA coding upstream 117973 59581099 ~ 59581875 (+)
LOC110503019 LOC106611219 coding upstream 354771 59336463 ~ 59345077 (+)
LOC118943835 NA coding upstream 833917 58864615 ~ 58865931 (+)
LOC110503040 LOC106579579 coding upstream 2111353 57570746 ~ 57588495 (+)
LOC110503013 NA coding upstream 2149052 57545275 ~ 57550796 (+)
LOC110503016 LOC106611257 coding downstream 3333 59703394 ~ 59816421 (+)
LOC110503015 LOC106589751 coding downstream 147050 59847111 ~ 59866775 (+)
LOC110503042 kcnk1 coding downstream 262154 59962215 ~ 59972534 (+)
slc35f3b slc35f3 coding downstream 312644 60012705 ~ 60174129 (+)
col9a1b LOC106560234 coding downstream 625228 60325289 ~ 60371061 (+)
G1886539 NA non-coding upstream 7093 59692493 ~ 59692755 (+)
G1886538 NA non-coding upstream 7370 59692255 ~ 59692478 (+)
G1886482 NA non-coding upstream 71880 59627751 ~ 59627968 (+)
G1886436 NA non-coding upstream 109549 59590029 ~ 59590299 (+)
G1886435 NA non-coding upstream 109942 59589645 ~ 59589906 (+)
G1886556 NA non-coding downstream 16234 59716295 ~ 59722804 (+)
G1886562 NA non-coding downstream 68215 59768276 ~ 59788630 (+)
G1886570 NA non-coding downstream 98561 59798622 ~ 59798998 (+)
G1886615 NA non-coding downstream 117363 59817424 ~ 59817690 (+)
G1886620 NA non-coding downstream 123226 59823287 ~ 59823625 (+)
G1885587 NA other upstream 835346 58862214 ~ 58864502 (+)
G1883457 NA other upstream 2686630 57012037 ~ 57013218 (+)
LOC110503001 LOC106611028 other upstream 2972654 56613066 ~ 56727194 (+)
G1882831 NA other upstream 3156592 56533617 ~ 56543256 (+)
G1882830 NA other upstream 3161365 56529795 ~ 56538483 (+)
G1886557 NA other downstream 24203 59724264 ~ 59736661 (+)
G1886558 NA other downstream 27685 59727746 ~ 59736471 (+)
G1886560 NA other downstream 49657 59749718 ~ 59786095 (+)
G1886561 NA other downstream 83925 59783986 ~ 59787989 (+)

Expression


Co-expression Network