G1886829


Basic Information

Item Value
gene id G1886829
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 59974330 ~ 59975699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2158381
TATCAAATAATCAGACTTTTCTTGTCTGTCAGAGAGCAGTCCTGAAGCATTACAGATGTAggctcttaatttgatcactctttgttgcagatgagctttgtgatttacatacATTCACtaaaaacccacactaacacagttatattaacattattgcacttttcatgtagcctacttttggccagccTAACCActaatcaagcaacattatggactacatGTTAAAATCCTGttcctgcaggattattttgctgtgacaatactggtcaaattaagatcctatatctgtacacACACTGCAAGTCTTCTAACAACAACATCACTTCTTCTAAATTCAGTTCTTCTTTGTCCTCTCACTTAAATCTGAAGTTCAGGACATAACTTTTGTACTTTCCAGAACCAATCATTTTTGGTCCAAAATGTTCAACCCGGTCATTTCCCATTTCTGAGTGGTTCACACAAGGTGTTCAGAAACCTGCTGTGGTCATATGATTGATGATAATACACTGCTAAAAATAAAGGTGCTTTATGAGATGAGTCACTGAACCTTTCATGGTTCTATACAGCATCATTTCTTCTGGCAGTGAACCATGATTCAGACCTGCTTTGTTCCCTTCTTAACCGTCCCTTTAACATACAATAAGCCACACAGTAAGTCCATTTCTTTCAGACTAAATAACGTGAGAAATACAGACAGTACAGCACTAGTCAAGAAACATTTACAACTACCTCAACATAACATCACAACTTGTACTTTAAACTAGCATCAAATAGCGTTTCAGTTCACTCCTGTAAAATGTACCTTAGAACTACAGTACTATGTGTACAGACTCTAACAGTATAACGTGATATTAGCTTCCATTTTCCCAGGTGGATGTCCTGTTAAATGTTCCCAACTGTGCTATTGTCAAGTTAGTAGGACTTTCTATCAACTTTCTACGAAGCCCATATCTATGTGTTTATAGCTGTGCTCATAAGGCATTATGACTGCATCATAACTCACTATAAGCGTGTTCATAAACACATGATAGATATGGATATAGTCTATATAAGAACGGTAGATAGATAGCAAGGCTGTTCTGAACAAGGATCCTGACAATGAACGAAGCTCCAATAGTAAGGCAGACATTTCCCTTATCGTTAAGTTACCCAGCGTACACATCAACTAGACATATGAAGGCTACATTTTGTGTGTCATTACGAGGGATAGTTAAGTTCCCGTGGACGATAAAGGGCTAAAATACTATCGTATTCAATATTACTAACAGTGGTTTGAAGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2158381 True 1282 lncRNA 0.37 2 59974330 59975699

Neighbor

gene id symbol gene type direction distance location
LOC110503014 LOC106611248 coding downstream 26139 59866980 ~ 59948191 (-)
LOC118943927 NA coding downstream 507449 59464171 ~ 59466881 (-)
LOC110503043 LOC106611227 coding downstream 520052 59355807 ~ 59454278 (-)
gpr75 gpr75 coding downstream 622421 59346393 ~ 59351909 (-)
LOC110503044 nrxn1 coding downstream 1207117 58028658 ~ 58767213 (-)
LOC118943837 LOC106613591 coding upstream 200100 60175799 ~ 60186033 (-)
tarbp1 tarbp1 coding upstream 210527 60186226 ~ 60225168 (-)
LOC118936588 LOC106613623 coding upstream 256802 60232501 ~ 60263274 (-)
LOC110514479 LOC106594326 coding upstream 290867 60266566 ~ 60320842 (-)
LOC110515674 col19a1 coding upstream 395747 60371446 ~ 60633294 (-)
G1886830 kcnk1 non-coding downstream 1777 59971912 ~ 59972553 (-)
G1886827 NA non-coding downstream 4166 59969821 ~ 59970164 (-)
G1886826 LOC106613705 non-coding downstream 5421 59968530 ~ 59968909 (-)
G1886821 kcnk1 non-coding downstream 11327 59962212 ~ 59963003 (-)
G1886818 NA non-coding downstream 16259 59957835 ~ 59958071 (-)
G1886832 NA non-coding upstream 10844 59986543 ~ 59987104 (-)
G1886836 NA non-coding upstream 14963 59990662 ~ 59990873 (-)
G1886837 NA non-coding upstream 18806 59994505 ~ 59995192 (-)
G1886839 NA non-coding upstream 21475 59997174 ~ 59997473 (-)
G1886843 NA non-coding upstream 25247 60000946 ~ 60001485 (-)
G1886825 NA other downstream 7664 59966362 ~ 59966666 (-)
G1885863 NA other downstream 883766 59089673 ~ 59090564 (-)
G1885150 NA other downstream 1731763 58234219 ~ 58242567 (-)
G1884227 NA other downstream 2238832 57734357 ~ 57735498 (-)
G1886838 NA other upstream 19685 59995384 ~ 59997063 (-)
G1887449 NA other upstream 798411 60774110 ~ 60825790 (-)
G1887761 NA other upstream 1174357 61150056 ~ 61151170 (-)
LOC118943840 NA other upstream 2179529 62152136 ~ 62164324 (-)
G1888836 LOC106562881 other upstream 2285138 62260837 ~ 62267505 (-)

Expression


Co-expression Network