XLOC_037885


Basic Information

Item Value
gene id XLOC_037885
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 29075291 ~ 29093359 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074978
cggccctccaggaacaagttagGACACCCTTGATTTAAGTGTGACTGATTTGCATGGTAGCTCATCGTGAACGGTGCCAGAAATGGGATGTGGAGTGGAGCACAACAGACTAGGATTCGACTTTGGCAAAGgatggttccagaaaccagGAccaggacacaccaagccaaCTCCAAACATCTAACACTGATGAAAACCAATTGTGTTGTTGGCTCATGATGGCTGCATCTGATCTTGTCTCGACCAAAAAGCTGCACAAAAACACACCAAGAAGATGGCAGACAACTGAAATGTGAGTGCACAATCAGCATCTTTATTAGACAGTGTGTCTTTCCACACACACTGGGGCAGTAATCTGTTTTCACTCAACAAAAGGAAACCAGAATATGAGACACTCGCACAAAAAGCCCAAACAAACCAGTGTTTAGTATCATTATCACAGTATGTGTCACTCACCACAAAGGGATTTGCTCATGCAAATACATCTGATAATCTAGTAATCCATATAATTTGCAAATATTTGGGAAATGCAGTGAATTTACTGCTGGCTTCTTTGTGTTCCCTCTTAACTTGAGTTGTTAACTTGGTCTTGTCAGTTCGGTTTTTGTTCTTATTCATTGCTAATTTGTtgctgaacagccaatcagagtgctcTCTTTAACTGATGACCAATGTAGATTTAACATGATGAGTTGGGCCAACTCAATCTGGTATTAACCGCACAAACGTCAGTGTGTGCGCACAAAACAACCTATAGCTGGATGGATGCTGCCAATCGGTTGACCTTCggcttggtgtgtcccagccTTAAAGGTATTCAGTCAGGTTCAGCTCAGGCCAGTCAAGTTTCTCCACACCAGTTTCTTCATACCAGCTTTGTAGATTGCTGTACAGTATGAACGTATGAGCATGAAATTGTTCAAAATGTCTTTGTATGCTGAATTATTATTAGTTTCTTATACTGGAACTCTAAGGAATTAAGCCCAGTTTCTGAAAAACAACCCCACACCATAATCCCATCTCCATCAAACTTTCTACTTGGCACAATGAAATCACACAATCGACTGTTGTAGTTATTATCCACATCtcattacaaattacaaattattttacatcacaaattattttaaaacatgagTTTCATCTATGAAGATATCTTTCTTCCTTTCAAAAATATGTTGTTGTGCACCTTTCATCATCATTGTATTACATTTAATctcatcattttaatttaatttttcttaTGACATTTTTCGAAAGACTTCTTACATGTTTTTCTGTAAGCGAAGAAAACTCAGCAACTATACCAAATTGCATACTTTTGTGAAATGAGCTCCTTTGTAGAAAATAGAGGTGTTTTCTTGCCTCTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074978 True 1371 lncRNA 0.39 3 29075291 29093359

Neighbor

gene id symbol gene type direction distance location
XLOC_037884 FP103048.1 coding downstream 9873 29064147 ~ 29065418 (-)
XLOC_037883 NA coding downstream 16485 29057437 ~ 29058806 (-)
XLOC_037882 tmem177 coding downstream 35785 29034221 ~ 29039506 (-)
XLOC_037881 ptpn4a coding downstream 45311 28939912 ~ 29029980 (-)
XLOC_037880 epb41l5 coding downstream 135495 28870357 ~ 28939796 (-)
XLOC_037886 pth2ra coding upstream 28680 29122039 ~ 29321665 (-)
XLOC_037887 hs6st3b coding upstream 245627 29338986 ~ 29427576 (-)
XLOC_037888 dnajc3a coding upstream 390684 29484043 ~ 29497916 (-)
XLOC_037889 NA coding upstream 413061 29506420 ~ 29509975 (-)
XLOC_037890 arhgap20 coding upstream 436042 29529401 ~ 29544720 (-)
XLOC_037877 NA non-coding downstream 454937 28618252 ~ 28620354 (-)
XLOC_037875 NA non-coding downstream 478000 28596496 ~ 28597291 (-)
XLOC_037871 NA non-coding downstream 867455 28204002 ~ 28207836 (-)
XLOC_037893 NA non-coding upstream 558682 29652041 ~ 29662625 (-)
XLOC_037894 NA non-coding upstream 588838 29682197 ~ 29707257 (-)
XLOC_037896 CR749776.1 non-coding upstream 714588 29807947 ~ 29808064 (-)
XLOC_037898 BX322575.1 non-coding upstream 1011561 30104920 ~ 30107960 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G122043 NA non-coding NC_056715.1 CM032084.1 18312865 ~ 18313136 (+)