G1886954


Basic Information

Item Value
gene id G1886954
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 60186273 ~ 60187161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2158511
CTTTCCAACAATTTCTCCACTCCAAAAAAAGCATTGTTCAATATTTAATACCACACAGAAAAAACAGAGACTCGGGGAAAATCAAGTGTCTGCTGCTTTACTGGGAAAGCACTTGGAAACATGACCCTGTCCAAACGACAAACGCATTGGAATATTCTAATGTAATATCGAGCCACGGCTAAAGCGGAATACCCTCCAATGGATCTGAGATGGGTTCTAGGTCTAATAACAAGTCACTACTTGTAAGACTAACATCCATTCTCTAGATCTATGGCCCATTGGATGGTTAAGGCTGCATTTTAAAATGGGTTAAAGGTACAGTTGTCGGTAGGTACAGATATAGGATCAGCGTCCccttctaaccttaaccattagtggggaaaggccccatgtagctcagttggtagagtgtgGTGCTTGTAACACcagagttgtgggttcgattcccatgggggaccagtatgaacatgcatgtactcactactgtaagtttctctggataaaagcatctgcttaaTGACTACAATGTAAAGGGGCAACTTAACCCTACTCCGCAGCGGGGGCAGTAGGGGGTAGGTACTGGTGGGTTTACCCCCACACTAGGGCCATGTTCATTAGTGCACGCAatggaaaacatttaaaaaacgttTTACAACAGAGTGAAAACGTTTGTTTCTTATCATCCAGGTCATCTCTCCCTATTTCAGTCTGACTTCACTCCAGTAGTGGGCAGGTACTGGCGGGTGTACTCCCACACCAGCAGGGCGGCGCTCACGTGTACGTTGAGGGAACGGATGACACCTTGCTGAGGgatctccacacacacatccagcagCTGGAGCAGGTTAGCTGGGATACCCTCACGCTC

Function

NR:

description
probable methyltransferase TARBP1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2158511 True 868 lncRNA 0.46 2 60186273 60187161

Neighbor

gene id symbol gene type direction distance location
slc35f3b slc35f3 coding upstream 12144 60012705 ~ 60174129 (+)
LOC110503042 kcnk1 coding upstream 213739 59962215 ~ 59972534 (+)
LOC110503015 LOC106589751 coding upstream 319498 59847111 ~ 59866775 (+)
LOC110503016 LOC106611257 coding upstream 369852 59703394 ~ 59816421 (+)
LOC118943836 NA coding upstream 604398 59581099 ~ 59581875 (+)
col9a1b LOC106560234 coding downstream 138128 60325289 ~ 60371061 (+)
LOC110516668 lmbrd1 coding downstream 458905 60646066 ~ 60907352 (+)
LOC118943928 LOC106577473 coding downstream 1306496 61493657 ~ 61522049 (+)
LOC118943929 LOC106577282 coding downstream 1353991 61541152 ~ 61555170 (+)
LOC110532895 LOC106577282 coding downstream 1370850 61558011 ~ 61575674 (+)
G1886947 NA non-coding upstream 2251 60183821 ~ 60184022 (+)
G1886942 NA non-coding upstream 7117 60178863 ~ 60179156 (+)
G1886762 NA non-coding upstream 30397 60155664 ~ 60155876 (+)
G1886761 NA non-coding upstream 32943 60153095 ~ 60153330 (+)
G1886956 NA non-coding downstream 3700 60190861 ~ 60191098 (+)
G1886967 NA non-coding downstream 32133 60219294 ~ 60219620 (+)
G1886969 NA non-coding downstream 44573 60231734 ~ 60232020 (+)
G1886970 LOC106613623 non-coding downstream 45775 60232936 ~ 60235115 (+)
G1886992 NA non-coding downstream 79440 60266601 ~ 60337801 (+)
G1886561 NA other upstream 398284 59783986 ~ 59787989 (+)
G1886560 NA other upstream 400178 59749718 ~ 59786095 (+)
G1886557 NA other upstream 449612 59724264 ~ 59736661 (+)
G1887835 NA other downstream 1089614 61276775 ~ 61277763 (+)
G1888298 NA other downstream 1739585 61926746 ~ 61927857 (+)
G1888544 NA other downstream 2377364 62564525 ~ 62565083 (+)

Expression


Co-expression Network