G1886970 (LOC106613623)


Basic Information

Item Value
gene id G1886970
gene name LOC106613623
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 60232936 ~ 60235115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2158536
AGGGAAACAAAAGCAAAACATAAGATTAAAAATGCTGTTGGTTATTTTTAATAATGTAATGATGATACATTTAAATTTACACAGGATGTCAACGTGCAGTAAAGTCCTTTGCTCTTCACAATAGACCATAAAGTACTTCTAGAGATACTCCTGGTTCAAACCACGATTCACACAAACACCAATTAAGAAACTGAAGAAATGCAATGTTCACCCCTATATTTACAGTTATTGAAATGGTTACAATGTGTTAGTACctcaaagtaaaaaaatatagtaAAATAGTTGAAAATATAAGACAATTATGTACAAAGTATCTacaaaaggtaaaacaaaaatagTGTCAAACATGTTCAATAAATATGTAGAGTACGGTCTGTATTGGGATGATTATTGAAGGTGATGACCTCCTTCCGTTTCACAATGAATGCTACCAATACCAATCAATCCTCTTAAAAAGGTGCATAAAGTCCTCCAACATCTCTGTGCAGCCTCTCCCCTGTATCTGAGTCATACAGTAGAGCACAGGCATGAAGAGGGCCCTCCATGGTCCTTGATGTGACCAGGCCAGTACAGGTCGACCCGGGAGTGTAAAAACATTACGTTAGAACTCTAGCTGCATGCAGCCACTCCCCTGTATCCTACAGTTTCATTGGAGGGAGATGTGGGTAGAGAATAGGCTTGAAGAAGGACATTGGTCCTCTGTGTTGTTCTACAGTATGAACTCCAACAGCTGTTCGTCTCCCAGTAGATCCAGAGACAGGCAGTTCATAGACCTGTGTCCATAGAAGGTGCCCTTAGCCGGGCAGTGGAGGGGGAGGTAGTAGCCTCCGTTGTTACACCCTGGGGGGCTCTTAGCGTCACACTGGGAGTCCGGGAGGGGCAGGCCAAAGGTGTAGCTGTGGGAAGAGTCAGGGGGTAGAGTCGTGCCGAGGGGGGCGGGAGGGGGGAAGAGGCGAACGTCATCCAGGCTCTGGCTGTGGCGGTCCACGCAATGGGATCTTGACTTCAGGATCTGCAAtacaaagagagagtgagtttATGAAAGTAAtaagagatggaaggagaggaaacATGGAGTATcctgagaaaggaggaggaggaagaagaggataggGGTCTTACCTGTCCCAGGGTATCTTTGCTGCGTAGTGTCACCAGGTCTTCATCTCTGTCTACCTGATCCCCCTTGAATCCTGTTAAAATGACATCACTGTAGTCAGCTAGAAGCAGGTATTtggactccattttacactcacATTTAATTTCAGGATGCAAGAATCTGAAATAATATCATATCACATTCCCAGGCCACTAGGTGGCATATGAGACTCAAATTGTAATGTTCTTTATGAACAAAATGTAAATCTCTGCTAATGTTTCATTACAACGAGTTaaactagtagcagtagtactttCCCCCAGATATATATGGAACAAATGCACGTTTTGGTAGTATGTTACTCAAAACACTTCTCTAATGTCCAATGTGGTGTCAGTGTTAAAATACCTACAATATAATGTGATAAGAACTCATATAGCTTACAACTTCACAATGAGTCTCTGAGGTGAGCACGGGACAATCAACCTCACCTTCACAATGAGTCTCTGAGGTGAGCACGGGACAATCAACCTCACCTTCACAATGAGTCTCCGAGGTGAGCACGGGACAATCAACCTCACCTTCACAATGAGTCTCCGAGGTGAGCACGGGACGATCAACCGACACGCCCTCCATCAGCTCAGCCAATCTCAGCATTTCCTCTGGGTCGTCCACGGAAACCTCTCCTGGACTGTCCACACTGGCCTGCTGGGTCTCTGGAGAGGAGAATACTTAGTGGAATTACTACTTTTGAATGAGCGATCGATGTGTCCAGTAGTATTCCACTTAGAATGAAGCCATAtacataacaggtgacatcaataagggatcctagttttcactgtcattcacctggtcagtctgtcatggaaagtgtATCTGGAACAGAGGAATGAATCCATAAGTAAAACTATGTCTTTGTTCTAATAACCACACTAACAT

Function

NR:

description
uncharacterized protein LOC110510599

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2158536 True 2041 lncRNA 0.44 2 60232936 60235115

Neighbor

gene id symbol gene type direction distance location
slc35f3b slc35f3 coding upstream 58807 60012705 ~ 60174129 (+)
LOC110503042 kcnk1 coding upstream 260402 59962215 ~ 59972534 (+)
LOC110503015 LOC106589751 coding upstream 366161 59847111 ~ 59866775 (+)
LOC110503016 LOC106611257 coding upstream 416515 59703394 ~ 59816421 (+)
LOC118943836 NA coding upstream 651061 59581099 ~ 59581875 (+)
col9a1b LOC106560234 coding downstream 90174 60325289 ~ 60371061 (+)
LOC110516668 lmbrd1 coding downstream 410951 60646066 ~ 60907352 (+)
LOC118943928 LOC106577473 coding downstream 1258542 61493657 ~ 61522049 (+)
LOC118943929 LOC106577282 coding downstream 1306037 61541152 ~ 61555170 (+)
LOC110532895 LOC106577282 coding downstream 1322896 61558011 ~ 61575674 (+)
G1886969 NA non-coding upstream 916 60231734 ~ 60232020 (+)
G1886967 NA non-coding upstream 13316 60219294 ~ 60219620 (+)
G1886956 NA non-coding upstream 41838 60190861 ~ 60191098 (+)
G1886954 NA non-coding upstream 45775 60186273 ~ 60187161 (+)
G1886947 NA non-coding upstream 48914 60183821 ~ 60184022 (+)
G1886992 NA non-coding downstream 31486 60266601 ~ 60337801 (+)
G1887005 NA non-coding downstream 60226 60295341 ~ 60296111 (+)
G1887014 NA non-coding downstream 72898 60308013 ~ 60309864 (+)
G1887073 NA non-coding downstream 232751 60467866 ~ 60468690 (+)
G1887108 NA non-coding downstream 311203 60546318 ~ 60546736 (+)
G1886561 NA other upstream 444947 59783986 ~ 59787989 (+)
G1886560 NA other upstream 446841 59749718 ~ 59786095 (+)
G1886557 NA other upstream 496275 59724264 ~ 59736661 (+)
G1887835 NA other downstream 1041660 61276775 ~ 61277763 (+)
G1888298 NA other downstream 1691631 61926746 ~ 61927857 (+)
G1888544 NA other downstream 2329410 62564525 ~ 62565083 (+)

Expression


Co-expression Network