G1886992


Basic Information

Item Value
gene id G1886992
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 60266601 ~ 60337801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2158572
AATGATACAAACCATTTTCACAAAGAAATGAGAAGTTGATTTTTTATCTAAAAACAATACTCATGTTAAAAAGCATAAATAATTCCCCCACCCATCTATGACAGCAAAACATAAATACTCTCCATGAACCAAAATATGTGCTATTCATAAGTACTGACCCTTGGCTACACCCCACCTTTACATCTGGGTCGTATTCATTTGGCACCAGGCGGAAGAAAACAGAATCAAACAGGGTTCTTCCCTacatgaacttgtccaataagcaAGGCTTTCTTTGCTTTCTGTTAgaaaacgttttgctacggtgagccctaatgaacacgacccttcTGGCTATAACAGTTGAACGAGTTTATTTAAAACCTCTTGTAATAAAATGTTCTCATGCTTTAATCAAGCAAGGCTCGTATAATGTTCCCAACACCAGGTTGGGTTTAGTGTTGTGCACGATGCTGTAATGGCAAAGTAACAGCATACAGTATAAAACCTAGCTCTGGTCCATTGCGCAACGAGTTGTCTCTTCCCCTGTTCAGGAAGGCTCAGCGCCAACAACCTGCACCGAACGCCCTGGTCCAGAGCTATAGAAAACCGCAAAGCCTTATAAGTCCCAGGCTGCATTGTCCGAGTTACAATCAAATTGATTCCGTTAAGTTAGTTCGACTAGACTGGAAGCCTTTAcctttgtaaaataaaaaaataacacaaaTTAAAATTCTGATAGTAAAATATGTACTTAGTAAAAATGACCATCCTCAGTAGAAAATCAGTTTTTTTTAATACAGTTGTGGTGCAAATTAATGCAAGAGTATAATAGTTTGACTTTACGActaatttgttgttgttgaagaaaaTGCAccttttaaataaaggtgacgACAATATGAGAAGATGAGTCAGCTCACCATTTTTAGCAGCTACATTTCCAGATCGGTATTGCAATCGTCttaataaatgaatgaatggTTTGAACAAAACCATGTGAAAATATAACAATTTCATAGATAAATAACACTGAAAAGATTACAATATGAGAAGGAAAACCATCCCCCCACCACAAGTACATTCGTAAAATCAACTTGAAATCATCCTTTGAAAAACGGAAGTAGAACAATAAAAATGAGGAACATTCActaacaaaacaatgaaaaaaagagctaaaaaaaactaaaaataaaCACTGATATTAGAATTTTGATCTTCCATATGGAAGCAGATGCATCTATAAAACCGTACGCCTCAACCAGATACAATATTGAGAATTGGGGTTTGGATGCAGTGAGGTAATATAAGCTACACATGATAGAAATAGCATCACTAGATTGATGGTCTAGTAATTATATTCTATGTATGCTCCacgttctcctctcttcccctctccctccagccaCAGGTTTTAtttgctagcctggtcccagatcagtttgtgcagTCTTGCCAACTTCTATGGTCATTGGATGGAGATGGGCAGAGATATCACTTCAGCATCACTGACATGGTCTTAAATGTGTGAACTCCTTCCACAGGAGTTAGTTTGACCTCCACAGGATacaatgcatacatttttttttggcATGTCAATGACTATAGGAGTTGACCAAAACGatctgggaccagggta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2158572 True 1618 lncRNA 0.38 2 60266601 60337801

Neighbor

gene id symbol gene type direction distance location
slc35f3b slc35f3 coding upstream 92472 60012705 ~ 60174129 (+)
LOC110503042 kcnk1 coding upstream 294067 59962215 ~ 59972534 (+)
LOC110503015 LOC106589751 coding upstream 399826 59847111 ~ 59866775 (+)
LOC110503016 LOC106611257 coding upstream 450180 59703394 ~ 59816421 (+)
LOC118943836 NA coding upstream 684726 59581099 ~ 59581875 (+)
LOC110516668 lmbrd1 coding downstream 308265 60646066 ~ 60907352 (+)
LOC118943928 LOC106577473 coding downstream 1155856 61493657 ~ 61522049 (+)
LOC118943929 LOC106577282 coding downstream 1203351 61541152 ~ 61555170 (+)
LOC110532895 LOC106577282 coding downstream 1220210 61558011 ~ 61575674 (+)
LOC110522442 LOC106577282 coding downstream 1268223 61606024 ~ 61614271 (+)
G1886970 LOC106613623 non-coding upstream 31486 60232936 ~ 60235115 (+)
G1886969 NA non-coding upstream 34581 60231734 ~ 60232020 (+)
G1886967 NA non-coding upstream 46981 60219294 ~ 60219620 (+)
G1886956 NA non-coding upstream 75503 60190861 ~ 60191098 (+)
G1886954 NA non-coding upstream 79440 60186273 ~ 60187161 (+)
G1887073 NA non-coding downstream 130065 60467866 ~ 60468690 (+)
G1887108 NA non-coding downstream 208517 60546318 ~ 60546736 (+)
G1887289 NA non-coding downstream 289980 60627781 ~ 60628107 (+)
G1887291 NA non-coding downstream 291329 60629130 ~ 60629444 (+)
G1887295 NA non-coding downstream 294121 60631922 ~ 60632223 (+)
G1886561 NA other upstream 478612 59783986 ~ 59787989 (+)
G1886560 NA other upstream 480506 59749718 ~ 59786095 (+)
G1886557 NA other upstream 529940 59724264 ~ 59736661 (+)
G1887835 NA other downstream 938974 61276775 ~ 61277763 (+)
G1888298 NA other downstream 1588945 61926746 ~ 61927857 (+)
G1888544 NA other downstream 2226724 62564525 ~ 62565083 (+)

Expression


Co-expression Network