XLOC_037889


Basic Information

Item Value
gene id XLOC_037889
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 29506420 ~ 29509975 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074979
AGCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCCCCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTACAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTTGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctggtcaggattcttcaggagaagcagtggattcttgtggcagagatgttcaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAAGAACTTTCTTGCTTGTTTGCTACTGAAATGTActgATTCGACATGTGCCCTTAACGAAGAGGGGTTAAAAGGTCTATGGATCATCATTCtcaaaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggatgttcttttactgtaatccagaagaggatgacctcaaccctgaatctaaagcatgtaataaaatctgtaaaaaattaaataaaattgtcatc
>TCONS_00074982
attgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCCCCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTACAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTTGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctggtcaggattcttcaggagaagcagtggattcttgtggcagagatgttcaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAAGAACTTTCTTGCTTGTTTGCTACTGAAATGTActgATTCGACATGTGCCCTTAACGAAGAGGGGTTAAAAGGTCTATGGATCATCATTCtcaaaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggatgttcttttactgtaatccagaagaggatgacctcaaccctgaatctaaagcatgtaataaaatctgtaaaaaattaaataaaattgtcatc
>TCONS_00074980
aTGTCTTTGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctggtcaggattcttcaggagaagcagtggattcttgtggcagagatgttcaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAAGAACTTTCTTGCTTGTTTGCTACTGAAATGTActgATTCGACATGTGCCCTTAACGAAGAGGGGTTAAAAGGTCTATGGATCATCATTCtcaaaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggatgttcttttactgtaatccagaagaggatgacctcaaccctgaatctaaagcatgtaataaaatctgtaaaaaattaaataaaattgtca
>TCONS_00074981
ACCGCAACAGCTCTACAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTTGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctggtcaggattcttcaggagaagcagtggattcttgtggcagagatgttcaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAAGAACTTTCTTGCTTGTTTGCTACTGAAATGTActggtatgtatttgtattttttggcacagacataagcataaggttacccagtccaaagaatattaatatatttttatgttgttgtgttcttTTTTTAAGATTCGACATGTGCCCTTAACGAAGAGGGGTTAAAAGGTCTATGGATCATCATTCtcaaaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggatgttcttttactgtaatccagaagaggatgacctcaaccctgaatctaaagcatgtaataaaatctgtaaaaaattaaataaaattgtca
>TCONS_00074985
attgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCCCCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTccatgtatattaaatatctacattgtttaggcatatgtgattgtatgagataaaatgcatttattctttcactactattgtaataacagaaagaaacgcattagttttactattactattgtttatgacaaacattaaaaaactacagcataagctcacaaaatattgtggcctaactgtttaaaactaattgttctgggtgttgatagtggccaaccattttttttctttttcagaaagtattttgttttgtctgattttatgacaccttataggccatcaactgcccacattggggtttaggaaattagaactgcttatgctgcttgtctactagtcttaggataagttagaaatgttataaatgtacattttttttgttgtttttatctggtaCAGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTCAGTGTGTACTTCATTGTTTCCATTAGTTCCTGTATCTGTAGACCTAGGTGACAGTGGGCTAGagtaaaattttggttttatttaaactaaggcatactgatggcctttttatctcagatttggtcatgcaagtattaatatatcctaaagtatttttatattctttccattggtggaaaatatgttggtataattatttttaatggactgctaagatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCCCTTCATCTGTTCTGCTTTCACACTAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACGaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAAGAAAATTAgattagaagatataaactgTTATGCACTTGTTCTGTACTGTTTCATTCCTTTTTCAAACACTGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGAATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAATCACATGAGTTTATATCTGAGATAGATGAACTATGTGATTGTCTTAAACTGATCTACAAGTAAATGCCAAAACTTattggtttacttatttatttatttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtatatgttaacCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGGTAACAATATCCAGTTGAATTTGTTTTAGTTGTTCAGTAACCTATTTGAATAGTATTGTGATTTTTTGATTGCTTATCACTGTAGACCGCAACAGCTCTACAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTTGTCATATTGCATGGTATGGACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAActttcttttcataaatatatttcagactctgctgacccagcaacaaagaggagggtgtt
>TCONS_00075378
aggttcattgcgatcccaaggttcactgcggttttccacaaggtaagtaaaaagtaaacaaataaacacgatttgttgataaagcatgtactgtgaACTAGCaacgttatctaattacatcaagttcatttattaaaaacatatttttctcacatataacgttggtcatgcattagaacaatataagttatacattttaagataaggaacagtgtaacgttaaccagattgttgttttccacaatagaattcgtgcaaaatctatatataatatgcaatatgcaactctaataatacaaatgtattcgtaattgtttcaatattaaagaacatcaagtgtttccaaaggtttattgtaaaaacaattattttccatgcctttaaaggaaaaaggcagaaattttgcccgtctgagcacattttattcattgtacaacacaaaactaaacaaaaaaatagcttaatctaccacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacaggtgtacattataaggtgttcactgttcagatatgaatattttttctttgctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCCCCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTccatgtatattaaatatctacattgtttaggcatatgtgattgtatgagataaaatgcatttattctttcactactattgtaataacagaaagaaacgcattagttttactattactattgtttatgacaaacattaaaaaactacagcataagctcacaaaatattgtggcctaactgtttaaaactaattgttctgggtgttgatagtggccaaccattttttttctttttcagaaagtattttgttttgtctgattttatgacaccttataggccatcaactgcccacattggggtttaggaaattagaactgcttatgctgcttgtctactagtcttaggataagttagaaatgttataaatgtacattttttttgttgtttttatctggtaCAGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTCAGTGTGTACTTCATTGTTTCCATTAGTTCCTGTATCTGTAGACCTAGGTGACAGTGGGCTAGagtaaaattttggttttatttaaactaaggcatactgatggcctttttatctcagatttggtcatgcaagtattaatatatcctaaagtatttttatattctttccattggtggaaaatatgttggtataattatttttaatggactgctaagatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCCCTTCATCTGTTCTGCTTTCACACTAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACGaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAAGAAAATTAgattagaagatataaactgTTATGCACTTGTTCTGTACTGTTTCATTCCTTTTTCAAACACTGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGAATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAATCACATGAGTTTATATCTGAGATAGATGAACTATGTGATTGTCTTAAACTGATCTACAAGTAAATGCCAAAACTTattggtttacttatttatttatttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtatatgttaacCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGGTAACAATATCCAGTTGAATTTGTTTTAGTTGTTCAGTAACCTATTTGAATAGTATTGTGATTTTTTGATTGCTTATCACTGTAGACCGCAACAGCTCTACAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTTGTCATATTGCATGGTATGGACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAActttcttttcataaatatatttcagactctgctgacccagcaacaaagaggagggtgtt
>TCONS_00074983
tctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCCCCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTACAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTTGTCATATTGCATGGTATGGACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAActttcttttcataaatatatttcagactctgctgacccagcaacaaagaggagggtgtt
>TCONS_00074984
tttttttactttaaaaaaaatattaaatttcaagtactaagtttaaaaatgttttcggctgatatttttcattttaaattatttattaaagttggagtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCCCCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTACAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTTGTCATATTGCATGGTATGGACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAActttcttttcataaatatatttcagactctgctgacccagcaacaaagaggagggtgtt
>TCONS_00074986
tatatatatatatatacaggtgtacattataaggtgttcactgttcagatatgaatattttttctttgctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCCCCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGA

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0035282 segmentation biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0007379 segment specification biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074979 False 893 lncRNA 0.41 6 29506420 29509052
TCONS_00074982 False 1137 lncRNA 0.41 7 29506420 29509824
TCONS_00074980 False 490 lncRNA 0.38 3 29506422 29507098
TCONS_00074981 False 733 lncRNA 0.38 3 29506422 29507318
TCONS_00074985 False 2134 lncRNA 0.35 2 29506953 29509824
TCONS_00075378 False 2878 lncRNA 0.33 1 29506953 29509830
TCONS_00074983 False 733 lncRNA 0.41 5 29506953 29509848
TCONS_00074984 False 890 lncRNA 0.38 4 29506953 29509975
TCONS_00074986 True 433 lncRNA 0.35 2 29508431 29509281

Neighbor

gene id symbol gene type direction distance location
XLOC_037888 dnajc3a coding downstream 8504 29484043 ~ 29497916 (-)
XLOC_037887 hs6st3b coding downstream 78844 29338986 ~ 29427576 (-)
XLOC_037886 pth2ra coding downstream 184755 29122039 ~ 29321665 (-)
XLOC_037885 NA coding downstream 413061 29075291 ~ 29093359 (-)
XLOC_037884 FP103048.1 coding downstream 441002 29064147 ~ 29065418 (-)
XLOC_037890 arhgap20 coding upstream 19426 29529401 ~ 29544720 (-)
XLOC_037891 cenpj coding upstream 59400 29569375 ~ 29579908 (-)
XLOC_037892 spryd7b coding upstream 126645 29636620 ~ 29643628 (-)
XLOC_037893 NA coding upstream 142066 29652041 ~ 29662625 (-)
XLOC_037894 NA coding upstream 172222 29682197 ~ 29707257 (-)
XLOC_037883 NA non-coding downstream 447614 29057437 ~ 29058806 (-)
XLOC_037877 NA non-coding downstream 886066 28618252 ~ 28620354 (-)
XLOC_037875 NA non-coding downstream 909129 28596496 ~ 28597291 (-)
XLOC_037896 CR749776.1 non-coding upstream 297972 29807947 ~ 29808064 (-)
XLOC_037898 BX322575.1 non-coding upstream 594945 30104920 ~ 30107960 (-)
XLOC_037905 BX571713.1 non-coding upstream 786700 30296675 ~ 30296791 (-)

Expression


Co-expression Network