G1887744


Basic Information

Item Value
gene id G1887744
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61080621 ~ 61081681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2159512
TTTTCAACCAACTTTTTGAACCTATTAAAAGtcataaaatgtgttttctttgcaACAAGTTTCAGCTGTATAAAATACCTTTGTAATATCTTAAAATCTGTGTCCAATAGTGATAATGCTTGGTCAGCCGTTGAAGCGATAGAGTACATGACAGATAAACCTATGAAAGAGGCGGCACAGTACTTTGTATTATCTAGGGTATTAGTAATATCATTTACAACACGTACAGTGGCCGTAATAGTACTGTGTTTAGGTCTAAAGCCAGATTGATTACTAGAAAGAGTATTGTTAATAGTTTAAAAAGATTGTAGTTGCCTATTCACCAGTGACTCTAGACGTTTAGCCAAACAGGAGAGCTTAGAGATGGGCCGGTAATTATCCAACTCACTACCATCGCCTCCCTTGAGGAGTGGTAAAGCAAAGCTGTTTTCCAAGATTAAGGAATCTTTCCTACGACAAATGTTTGATTAAAGATGCGTCACTACACCAGCAGTAATAGGTGCCACACACTTGAGTAAATATGGATCACTACACCAGCAATAATAGGTGCCACACACTTGAGTAAATATGGATCACTACACCAGCAATAATAGGTGCCACACACTTGAGTTAATATGGATCACTACACCAGAAATAATAGGTGTCACACACTTGAGTTAATATGGATCCAGATTGCCAGAGTCAAATGGTTTCTTATAATCTATAGCAGATAGTGTAGATAAGACCTCATCTTCTGTGACTTTTTGAAAATGAAAAACTGTCTTACTGTTTTCCACATCAGCTGAAGGCCGAGGGACTGAAACAATAGAGCGGTACGGATCATGTTGGACATTTATTCTTTCAAAAGAAAAGCAGCAGAAATAAAATGCTTATTAAAAACATCACAAATTTCAGTTCGGTCCCTGATGATCCCAGATTCTGATGTAATTTGCTTTGGCAGGGAAGTCAAGGAGTTTCCTCAAGCAGTACCATCTGACTGTAGTAGCATCAGACTGTAGAACCACCATGCTGTAG

Function

NR:

description
RNA-directed DNA polymerase from mobile element jockey

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2159512 True 1014 lncRNA 0.38 2 61080621 61081681

Neighbor

gene id symbol gene type direction distance location
LOC110515674 col19a1 coding downstream 447327 60371446 ~ 60633294 (-)
LOC110514479 LOC106594326 coding downstream 759779 60266566 ~ 60320842 (-)
LOC118936588 LOC106613623 coding downstream 817347 60232501 ~ 60263274 (-)
tarbp1 tarbp1 coding downstream 855453 60186226 ~ 60225168 (-)
LOC118943837 LOC106613591 coding downstream 894589 60175799 ~ 60186033 (-)
LOC110512348 LOC100135993 coding upstream 314012 61395693 ~ 61399289 (-)
LOC118943930 LOC106577366 coding upstream 909407 61991088 ~ 62010652 (-)
slc1a4 slc1a4 coding upstream 937747 62019428 ~ 62062283 (-)
LOC118943932 NA coding upstream 953296 62034977 ~ 62038662 (-)
LOC118943934 LOC106592896 coding upstream 1038249 62119930 ~ 62147728 (-)
adgrb3 adgrb3 non-coding downstream 46951 60939373 ~ 61274617 (-)
G1887720 NA non-coding downstream 51257 61027110 ~ 61029364 (-)
G1887718 NA non-coding downstream 55866 61024263 ~ 61024755 (-)
G1887711 NA non-coding downstream 74915 61004934 ~ 61005706 (-)
G1887709 NA non-coding downstream 76838 61002969 ~ 61003783 (-)
G1887746 NA non-coding upstream 8574 61090255 ~ 61091609 (-)
G1887752 NA non-coding upstream 36576 61118257 ~ 61118671 (-)
G1887774 NA non-coding upstream 97689 61179370 ~ 61180019 (-)
G1887808 NA non-coding upstream 140248 61221929 ~ 61222691 (-)
G1887826 NA non-coding upstream 181908 61263589 ~ 61265121 (-)
G1887449 NA other downstream 254831 60774110 ~ 60825790 (-)
G1886838 NA other downstream 1083558 59995384 ~ 59997063 (-)
G1886825 NA other downstream 1113955 59966362 ~ 59966666 (-)
gpr75 gpr75 other downstream 1728751 59346393 ~ 59351909 (-)
G1885863 NA other downstream 1990057 59089673 ~ 59090564 (-)
G1887761 NA other upstream 68375 61150056 ~ 61151170 (-)
LOC118943840 NA other upstream 1073547 62152136 ~ 62164324 (-)
G1888836 LOC106562881 other upstream 1179156 62260837 ~ 62267505 (-)
LOC110532867 LOC106562881 other upstream 1187941 62258118 ~ 62273944 (-)

Expression


Co-expression Network