G1888129


Basic Information

Item Value
gene id G1888129
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61589736 ~ 61590990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2159964
GAAGCATTCTCTCTTTAGTAGCTCTTGGTGTTACTTGCTGTTTTATATAAAGTCTTATGTAGTCTAATGGtgtctgtattctctacagtagtctaatggtgtctgtattctctacagtagtctaatggtgtctgtattctctacagtagtctaatggtggctgtattctctacagtagtctaatggtgtctgtattctctacagtagtctaatggtggctgtattatctacagtagtctaatggtggctgtattctctacaggagtctaatggtggctgtattctctacagtagtctaatggtggctgtattctctacagtagtctaatggtggctgtattctctacagtagtctaatggtggctgtattctctacagtagtctaatggtggctgtattctctacagtagtctaatggtggctgtattctctacagtagtctaatggtggctgtattctctacagtagtctaatagTGGCTGTgggctgtattctctacagtagtctaatggtggctgtattctctacagtagtctaatggtgtctgtattctctacagtagtctaatggtggctgtattctctacagtagtctaatggtggctgtattctctacagtagtctaatagtggctgtattctctacagtagtctaatggtggctgtattctctacagtagtctaatggtggctgtattctctacagtagtctaatggtggc

Function

NR:

description
PREDICTED: proline-rich extensin-like protein EPR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2159964 True 719 lncRNA 0.40 2 61589736 61590990

Neighbor

gene id symbol gene type direction distance location
LOC110532895 LOC106577282 coding upstream 14062 61558011 ~ 61575674 (+)
LOC118943929 LOC106577282 coding upstream 34566 61541152 ~ 61555170 (+)
LOC118943928 LOC106577473 coding upstream 67687 61493657 ~ 61522049 (+)
LOC110516668 lmbrd1 coding upstream 682384 60646066 ~ 60907352 (+)
col9a1b LOC106560234 coding upstream 1218675 60325289 ~ 60371061 (+)
LOC110522442 LOC106577282 coding downstream 15034 61606024 ~ 61614271 (+)
LOC118943838 LOC106577289 coding downstream 24992 61615982 ~ 61620197 (+)
LOC118943839 LOC106577359 coding downstream 152759 61743749 ~ 61815674 (+)
LOC110516873 LOC105008825 coding downstream 232475 61823465 ~ 61990656 (+)
LOC118943931 NA coding downstream 446665 62036002 ~ 62038690 (+)
G1888128 NA non-coding upstream 1372 61587587 ~ 61588364 (+)
G1888096 NA non-coding upstream 28572 61559527 ~ 61561164 (+)
G1888083 NA non-coding upstream 44102 61544531 ~ 61545634 (+)
G1888060 NA non-coding upstream 72162 61517339 ~ 61517574 (+)
G1888161 NA non-coding downstream 58064 61649054 ~ 61649486 (+)
G1888170 NA non-coding downstream 81986 61672976 ~ 61673579 (+)
G1888238 NA non-coding downstream 211012 61802002 ~ 61802900 (+)
G1888251 NA non-coding downstream 243620 61834610 ~ 61835067 (+)
G1888257 NA non-coding downstream 260389 61851379 ~ 61852170 (+)
G1887835 NA other upstream 311973 61276775 ~ 61277763 (+)
slc35f3b slc35f3 other upstream 1418956 60012705 ~ 60174129 (+)
G1886561 NA other upstream 1801747 59783986 ~ 59787989 (+)
G1886560 NA other upstream 1803641 59749718 ~ 59786095 (+)
G1886558 NA other upstream 1853265 59727746 ~ 59736471 (+)
G1888298 NA other downstream 335756 61926746 ~ 61927857 (+)
G1888544 NA other downstream 973535 62564525 ~ 62565083 (+)

Expression


Co-expression Network