G1888698


Basic Information

Item Value
gene id G1888698
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61871509 ~ 61872582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2160707
TATGATGCTATCCCCAACATGCCAGTTTGCCCCTTCATCATCTCTAAGGGAACATCTCAGGTTATCATCTCTAAGGGAACACCTCAGGTTATCATCTCTAAGGGAACACCTCAGGTTTTATCATCTCTAAGGGAACACCTCAGGTTATCATCTCTAAGGGAACACCTCAGGTTTTATCATCTCTAAGGGAACACCTCAGGTTATCATCTCTAAGGGAACACCTCGggttttatcatctctctaagGGAACACCTCaggttttatcatctctctaagGGAACACCTCAGgttttatcatctctctaagGGAACATCTCAGgttttatcatctctctaagGGAACATCTCAGGTTTTAGCATCTCTCTAAGGGAACATCTCaggttttatcatctctctaagGGAACATCTCAGGTGTTATCATCTCTAAGAGAACACCTCaggttttatcatctctctaagGGAACACCTCAGGTGTTATCATCTCTAAGAGAACACCTCaggttttatcatctctctaaTGGAATGATATaagtgctggtctaggatcaggttcctcctgtccatgtaatcttattcattgtgatctaaaaggctaaactggtcctagatcagcagtcTTACTATGAGAAGCTTAGTGAATACGGACTCTCCGATCCCCTTTCCATTGGAGTGATTTCACGGTTGAACATAGGGTATTTCATGAAAGGATCTCAAGATAATGGTGAATTGGCAGGCAGTGGGGAATAGGATGAGGGGTAAACACTctacttgacacccagcgtcataacatgttatgacacagtcataacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2160707 True 811 lncRNA 0.42 4 61871509 61872582

Neighbor

gene id symbol gene type direction distance location
LOC110512348 LOC100135993 coding downstream 472220 61395693 ~ 61399289 (-)
adgrb3 adgrb3 coding downstream 596892 60939373 ~ 61274617 (-)
LOC110515674 col19a1 coding downstream 1238215 60371446 ~ 60633294 (-)
LOC110514479 LOC106594326 coding downstream 1550667 60266566 ~ 60320842 (-)
LOC118936588 LOC106613623 coding downstream 1608235 60232501 ~ 60263274 (-)
LOC118943930 LOC106577366 coding upstream 118506 61991088 ~ 62010652 (-)
slc1a4 slc1a4 coding upstream 146846 62019428 ~ 62062283 (-)
LOC118943932 NA coding upstream 162395 62034977 ~ 62038662 (-)
LOC118943934 LOC106592896 coding upstream 247348 62119930 ~ 62147728 (-)
LOC118943840 NA coding upstream 281323 62152136 ~ 62164324 (-)
G1888668 NA non-coding downstream 81603 61789014 ~ 61789906 (-)
G1888646 NA non-coding downstream 114726 61755523 ~ 61756783 (-)
G1888557 NA non-coding downstream 280838 61589702 ~ 61590671 (-)
G1888104 NA non-coding downstream 310828 61560050 ~ 61560681 (-)
G1888056 NA non-coding downstream 358346 61512874 ~ 61513163 (-)
G1888716 NA non-coding upstream 29485 61902067 ~ 61902744 (-)
G1888744 NA non-coding upstream 65374 61937956 ~ 61938261 (-)
G1888745 NA non-coding upstream 66063 61938645 ~ 61938852 (-)
G1888747 NA non-coding upstream 68579 61941161 ~ 61941379 (-)
G1888748 NA non-coding upstream 70552 61943134 ~ 61944828 (-)
G1887761 NA other downstream 720339 61150056 ~ 61151170 (-)
G1887449 NA other downstream 1045719 60774110 ~ 60825790 (-)
G1886838 NA other downstream 1874446 59995384 ~ 59997063 (-)
G1886825 NA other downstream 1904843 59966362 ~ 59966666 (-)
gpr75 gpr75 other downstream 2519639 59346393 ~ 59351909 (-)
G1888836 LOC106562881 other upstream 388255 62260837 ~ 62267505 (-)
LOC110532867 LOC106562881 other upstream 397040 62258118 ~ 62273944 (-)

Expression


Co-expression Network