G1888316


Basic Information

Item Value
gene id G1888316
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61960701 ~ 61961013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2160179
ccctattccctacatagtgcactacttttgaccagagtccagcTTAAATGAAGTAACACAGAACACGTTTAGGGTTACAGCATTAGCAGTAgtttgcatccaaaatggcatcctattccctacatagtgcactacccaatgggccctggtcgaaagtgGTGCActttacagggaatagggtgcagtttgGGATATACACAAAGACACTTCTGCTACCGCTATATCCCTAAACATGTCCTGGGTCAATTCATTTACACCTGCTAATCAAATAATGACAAGCTAACCAGAGAGAAAGACACCAGCGCAGAGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2160179 True 313 lncRNA 0.45 1 61960701 61961013

Neighbor

gene id symbol gene type direction distance location
LOC118943839 LOC106577359 coding upstream 145027 61743749 ~ 61815674 (+)
LOC118943838 LOC106577289 coding upstream 340504 61615982 ~ 61620197 (+)
LOC110522442 LOC106577282 coding upstream 346430 61606024 ~ 61614271 (+)
LOC110532895 LOC106577282 coding upstream 385027 61558011 ~ 61575674 (+)
LOC118943929 LOC106577282 coding upstream 405531 61541152 ~ 61555170 (+)
LOC118943931 NA coding downstream 76642 62036002 ~ 62038690 (+)
LOC110531647 LOC106592896 coding downstream 117000 62078013 ~ 62114232 (+)
LOC110516194 LOC106562987 coding downstream 330726 62291739 ~ 62339471 (+)
LOC118936589 LOC106562987 coding downstream 382388 62343401 ~ 62415570 (+)
LOC118943939 NA coding downstream 454647 62415660 ~ 62416166 (+)
G1888315 NA non-coding upstream 4374 61956057 ~ 61956327 (+)
G1888309 NA non-coding upstream 11237 61949208 ~ 61949464 (+)
G1888302 NA non-coding upstream 27915 61932511 ~ 61932786 (+)
G1888265 NA non-coding upstream 94161 61866174 ~ 61866540 (+)
G1888257 NA non-coding upstream 108531 61851379 ~ 61852170 (+)
G1888317 NA non-coding downstream 1374 61962387 ~ 61962698 (+)
G1888322 NA non-coding downstream 14323 61975336 ~ 61975548 (+)
G1888335 LOC106560778 non-coding downstream 47856 62008869 ~ 62010790 (+)
G1888336 NA non-coding downstream 50091 62011104 ~ 62012392 (+)
G1888347 NA non-coding downstream 52947 62013960 ~ 62014508 (+)
G1888298 NA other upstream 32844 61926746 ~ 61927857 (+)
G1887835 NA other upstream 682938 61276775 ~ 61277763 (+)
slc35f3b slc35f3 other upstream 1789921 60012705 ~ 60174129 (+)
G1886561 NA other upstream 2172712 59783986 ~ 59787989 (+)
G1886560 NA other upstream 2174606 59749718 ~ 59786095 (+)
G1888544 NA other downstream 603512 62564525 ~ 62565083 (+)

Expression


Co-expression Network