G1888363


Basic Information

Item Value
gene id G1888363
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62048487 ~ 62053170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2160248
CAAACTCTCCATGAATGACATGTACTTTATGCAGTACTGTTTGGTGATGGTGGGTCTGAATGGGGGTGTGAATCATGCCTATGGGGCCACTGGTAATGTGCACGCTGTTGGGATGGAGCCTACAGAGCCTAACCTTTTAACTTTTTTACACAttctgttgttttacagcctggattaaattgagatgttatgtcactggcctacacacaatacaatacccAAATTCATTCAAATGAAAAGCTGTAATGTTGTGAGTCAATAAGTTTTCTATCCTTTTGTTATgggaagcctaaataaattcaggggtaaaaatgtgcttaacaagtcagataatggatcaacaacattgtagttactccacaatagtaacctaaatgacagagtgaaaacaaggacgcctgtacagaataaaaatattccaaaacatgcatcctgtttgcaacaaggcactaaagtaaaactgcagcaaaatgtggcaaagaaatgaactttcatgtcctgaatacaaagcgttatgtttggggcaaatccaacaacacatcactgagtaccactcttcatattttcaagcatggtggtggctgcatcatgttatgagtatgcttgtcattggcaaggactagggagtttttttttataaaaaaaatggaatagagctaagcacaggcaaaatcctagaggaaaacctggttcagtctgctttctaacagacactgggagacaaatgcacctttcagctggacaataacctaaaacacagggCCAAATCTAcagtggagttgcttaccaaggtgacatttaatgttcctgagtggcctcgttacagttttgatttaaatgggcttgaaaatctatggcaagacttgagaatgtctgtctagcaatgatcaacaaccaaacgTGACAGAGCTAGAagaaaagaataatgtgcaagtattgtacaatccaggtgtgcaaagctcttagagacttacccagaaagactcacagctgtaatcactgccacacataattctaacatgtattgactcagcggTGTCAATACTTATGTACAATGAAATGTTTCTGTATTTCAGTtccaatacatttacaaaaatgtctaaaaacatgtttcccatttgttattatggggtagtgtgtgtagatgggtgagaaaataaatacattataatccatgttgaattcaggctataacacaacatgtggaataaatcaagtggattgaatactttccgaaggcactgtatatgctagGAGCTAGTCCTATTGGCTATAGGCTAGGCTACAGTTATTAATCATATAGCCTATCTTGGATACAATTAGGTGCTCTTAAAATCCGTGCATCGATGCGTACTGTCAGACCATTCTCTCATAACTCCTATGTGCTTCATGTTGTCATTGAGACCGAAATACTTTGTTCCCGATCCCAAAATAACACATGCAGTTGCCAAAGAAGACGAGGGGCGGGTTTACCGCCCGGCCCTGCTAATAATCCATTCAACATTGTACGCGAGCGGACAGGCCTTTTAGGGGTCTGCGTAGATCTCAGTCGTCCTACATCTTCAGATATTATGTAATGTCAGTTATCCTATAAGATTGAAAATTGCAGCAATGTTATTTTGTAGGCTGTACATGAATAAAGTTTAGGCTACAAATCAATCTCTGGTGATCTTGTGTTGTGTCATGGTGTAGCTTATAGGCTCTCAACATcattataatatatattattttttaactaggtaagtcagttaagaacaaattcttattttcaatgacagtctaggaacagtgtgttaactgcctgttcaggggcagaacgacagaacggCTCGGGGgctttgaactcacaaccttccggttactagtccaacgctctaaccactaggctaccctgccgcccctatgtGAATATGGCACACAGTGCAATGATAGGCCTAATGCATGATAACAGAAATAGGTTAGGCCAAATAGCCTGCAGTAACTTAATTTCCTATAGGCTTTGTGTGAATGATTGATTATTCAGAGGTTTTTTTATCTGGACTTCTGCCTACTTTGAGTGACACGGAGGCAGACTGTCATCACTCCTAGAATCCAACTAGATGACACCATAATAAAGGTTATCTCCCACTCAGAGATTCCTGTCCTCCTCCCAATAGGCCTACTGACAGTTTGAACATATCTAAAACATGCTGCAGCTTTCTAATAAGAAGGCCTAATTTACTGTCACTTATAAAAGAAAAAGTCATTTTGTTACCAAATCTGTCAGTTAGCTAAATGGCTAGGGTGGTAGGCCTAAGTTACTTACATTAATGAACAAACTTAATAGGTCATTTTGATAAGTATATGCTATATATTTCATATGAGACGGCCATGTTGTCTGTTAATCAGGTTCCAGATTTATATGTAGATGATCTTGATCAGCTGATCAGCTGTCCCTGTCTGATGTTGATTTTTGATGTAACAGTGATTTTGTTATTTCCATATACACTTTAGATTGAATATTCATAAAACTGTACATGGTTTATATTCCATTGTGAAATCTCTGCCCACATCTAGGCCACCGGCGAGCTAAAACTAAATCACCCTTGTAGACTAGTAGGGATGGATGTTGGAATCTACAGTTTGAACTTGTGCACTAAACTAAATCTACAGGCTACCATACTGTACAGTCTTTGAGACTACATTACATCTAGGCCTTGGTCATGACTGTCAGTTCCATTAAATTACACACAAGAGTCATAAGAGTCTCAGGTCCATTAcgttacacataagagtcattggaAGAAGGCCTCTTCTGTAGGTGGGAGTACTACAGCTTCTTCAGGATCAGTGTCCTGTCCTCGGGATGGTTgtgctaacgtaggctaatgtgattagcatgaggttgtaagaaacaaaaaataaatccagtacatagacatatctgatatgggcagaaagcttcaatttacagtagccattacaTGGTAttataataccatgctattgtttgaggagtgtGCACAAATGTatgaataaaccaattaggcacatttgggcagtcttgatacaacatttttaatAGATATGCCATAGTTCATTACTTCactctaaaactttgcacatacagtgctgccatctagtggcaaaattctaaattgcgcctgggctaggaacgtttttttttctttgtattatcttttatcagatctaatgtgttatattctcctacatttgtttcacatttccacaaacttcaaagtgtttcctttcaaatggtatcaagaaaatgcatatccttgcttcaggtcctgagctacaggcagttagatttggttatgtcattttaggcgaaaattgaaaaaaaggggcggatccttaagacgTTCCATGATGCTCTGTTTAACATGCATCACTTGGGTTACGGTTTTAAAAGCATAAGGattatctttcatatcagtgaGAAAAAATTGTCAAAAAACAAAGGGTTAAATTGGTACACACCTTGATAGGATGAGGGTTAGTGTTCCCACTgggccatatctccatgttacagcaCATGTTTATGGATTACAGATGGAAGACAGAGGttccacctgtgctaattagctgtCTATCATGCTTcaaacacctgtgtgtaatggAAGAAGGCTGCCAGAAAcatgttgtcactgaaaaatactgtccaCAGCAACTGTGATAAAGCCAGTTAAAACCTTGTACAGTAAGGgtatattttgcatttgtgaaattattttaatGTGACATGAAAGTCAAGGGCTTTATTATTCTAGAGCCATATTGCAATTAAGAATCGATTCACTTTTAGAcggagtatttggctgttttggctgccACAGTCAGTATACCGCTGAAAATAacatttactgaacaaaaatatgaatacaaaatgtaatgtgttggtcccatgtttcatgagctgaaattaaagatccctgaaatgttccataatgcacaaaacatgtacagtatttctctcaaatttagtGCACAatttttgtttacatccctgttagtgagcatttctcctttgctaaaataatccatccacctgaaaggtgtgacacatcaagaagctgatgaaacagcatgatcataacacagatgcaccttgtgctggggacaataaaacagcactcttaaatgtgcagttttgtcacacaacacaatgttacAGATGtctcaggaatgtccaccagagctgttgccagataattgaatgttaatatcTCTACCATGGGCCGCCTCCCACATCGTTTTAGACAATTTGGCAGTactccaaccgacctcacaaccgtagaccatgtgtaactatgccagtccaggacctccatatccggcttcttcacctgcgggatcgtctgagaccagccacccggacagctgatgaagctaaggagtatttctgtctctaataaagcccctttgtgtGGGAaatctcattctgattggctgggcctggctccccagtcattgggcctggctcccaagtgggtgggcctatgccctcccaggcccacccatggttatgcccctgcccagttatgtgaaatccataaattagggtcaaattgatttattttaattgactgattaccttacatgaactgtaactcagtaaaacctttgaaattgttgcatattgcgtttatatttttcttcagtatataAAGATCATTGGACC

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2160248 True 4684 lncRNA 0.39 1 62048487 62053170

Neighbor

gene id symbol gene type direction distance location
LOC118943931 NA coding upstream 9803 62036002 ~ 62038690 (+)
LOC110516873 LOC105008825 coding upstream 57831 61823465 ~ 61990656 (+)
LOC118943839 LOC106577359 coding upstream 232813 61743749 ~ 61815674 (+)
LOC118943838 LOC106577289 coding upstream 428290 61615982 ~ 61620197 (+)
LOC110522442 LOC106577282 coding upstream 434216 61606024 ~ 61614271 (+)
LOC110531647 LOC106592896 coding downstream 24843 62078013 ~ 62114232 (+)
LOC110516194 LOC106562987 coding downstream 238569 62291739 ~ 62339471 (+)
LOC118936589 LOC106562987 coding downstream 290231 62343401 ~ 62415570 (+)
LOC118943939 NA coding downstream 362490 62415660 ~ 62416166 (+)
LOC118943940 LOC106563028 coding downstream 372674 62425844 ~ 62471811 (+)
G1888350 NA non-coding upstream 23385 62023195 ~ 62025102 (+)
G1888354 NA non-coding upstream 31971 62016315 ~ 62016516 (+)
G1888346 NA non-coding upstream 32458 62015599 ~ 62016029 (+)
G1888347 NA non-coding upstream 33979 62013960 ~ 62014508 (+)
G1888364 NA non-coding downstream 188 62053358 ~ 62054049 (+)
G1888366 NA non-coding downstream 4237 62057407 ~ 62057756 (+)
G1888373 NA non-coding downstream 69587 62122757 ~ 62178580 (+)
G1888374 NA non-coding downstream 74617 62127787 ~ 62129848 (+)
G1888298 NA other upstream 120630 61926746 ~ 61927857 (+)
G1887835 NA other upstream 770724 61276775 ~ 61277763 (+)
slc35f3b slc35f3 other upstream 1877707 60012705 ~ 60174129 (+)
G1886561 NA other upstream 2260498 59783986 ~ 59787989 (+)
G1886560 NA other upstream 2262392 59749718 ~ 59786095 (+)
G1888544 NA other downstream 511355 62564525 ~ 62565083 (+)

Expression


Co-expression Network