G1888763


Basic Information

Item Value
gene id G1888763
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62057396 ~ 62059150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2160782
gctgttctgcctgcggctatggaaccctgacttgttcaccggacatgctaccatGTCCCGGAactgctgtttttgactctctctctaacgcacctgctgtctctaactctgaatggtcggctatgaaaagcaaactgacatttactcttgaggtgccgacctttgcaccctctacaacctctATGAACGTTTCAACATCTTGGCCatttactgttataatctccacccagcacagccagaagaagactggccaaccctcagagcctggttcctctctaggtttcttcctaggttccttgttttctagggagtttttcctagccaccatgcttctacatctgcattgcttggggttttaggctgggtttctgtatagcactttttTGAATTGGTATAGCTCTGTTGGCTTGGTGTCTCTGACTACCAGAAGGACCCAGCATTGGCTACTTTTTGTATATAAACCGGTTCTTCAGAGACAACCTGTAAGAAATATTGGTTGCTAAATCCTTAGAAATGACGGACtatgtaaaaaaaactgtttgtCACTAAATCCGTctagaaggaccatgtaaaaatGGTTGGCTGGTATGGCCTCACCCGTCTGAGAGATTGGCTGTGAATGGCCTCACCCGTCTGAGAGatcggctgtgaatgccctcacccgtctgagagatcggctgtgaatgccctcacccgtctgagaGATCGGCTGTGAATACCCTCACCCGTCTGAGAGatcggctgtgaatgccctcacccgtctgagagatcggctgtgaatgccctcacccgtctgagagatcggctgtgaatgccctcacccgtctgagaggtcggctgtgaatgccctcacccgtctgagagatcggctgtgaatgccctcacccgtctgagaggtcggctgtgaatgccctcacccgtctgagaggtcggctgtgaatgccctcacccgtctgagaggtcggctgtgaatgccctcacccgtctgagagatcggctgtgaatgccctcacccgtctgagagatcggctgtgaatgccctcacccgtctgagagatcggctgtgaatgccctcacccgtctgagaGGTCGGCTGTGAATGGCCTCACCCGCTGTATACTTATAACTGATTAGTTTGGTTCTGCCCTCTATAGTGCTGACCAGTTAGAACATGATGTTGAGGTCCTTCACTATACTCTTGATagtcaccacaacacacacacacacacagacacctctgTTTCCATTTGAGGATGTTTATATGATTCTGGTAACCTGAATGACTTGGAATCTTATTGTTGTGGTTCTATAAAACAAAGATATGCACACATGTAAACAGTATTAattaaaacttcttcgggatcggtgtcccttccatgtGACGGCTGAGCTaccgtaggctaatgcgattagcatgacgttgtaagtaacaagatttcccaggacatagacatatctggaagaaagcttaaattcctgttcatctaactgcactgtccaatttacagtagctattacagtgaaataataccatgctgttgtttgaggagagtgcacaattttgaacatgaaaagtaattaataaacaaattaggcacatttgggcagtcttgatacaaaatgttgaacagaaatgcaatggttaattggatcagtcaaaaacattgcacatacactgatggcATGttgtggccaaaatctaaattgcacctgggctggaataatacattatggactttctcttgcatttcaaag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2160782 True 1755 lncRNA 0.47 1 62057396 62059150

Neighbor

gene id symbol gene type direction distance location
LOC118943932 NA coding downstream 20919 62034977 ~ 62038662 (-)
LOC118943930 LOC106577366 coding downstream 46744 61991088 ~ 62010652 (-)
LOC110512348 LOC100135993 coding downstream 658107 61395693 ~ 61399289 (-)
adgrb3 adgrb3 coding downstream 782779 60939373 ~ 61274617 (-)
LOC110515674 col19a1 coding downstream 1424102 60371446 ~ 60633294 (-)
LOC118943934 LOC106592896 coding upstream 60780 62119930 ~ 62147728 (-)
LOC118943840 NA coding upstream 94755 62152136 ~ 62164324 (-)
LOC118943935 LOC106592896 coding upstream 108427 62167577 ~ 62202628 (-)
LOC118943936 LOC106562881 coding upstream 148111 62207261 ~ 62209682 (-)
LOC118943933 LOC106592896 coding upstream 161751 62220901 ~ 62242704 (-)
G1888765 NA non-coding downstream 667 62056334 ~ 62056729 (-)
G1888807 NA non-coding downstream 2453 62054647 ~ 62054943 (-)
G1888804 NA non-coding downstream 7407 62049662 ~ 62049989 (-)
G1888801 NA non-coding downstream 29162 62027820 ~ 62028234 (-)
G1888766 NA non-coding upstream 1137 62060287 ~ 62069511 (-)
G1888812 NA non-coding upstream 21535 62080685 ~ 62083380 (-)
G1888806 NA non-coding upstream 51696 62110846 ~ 62114221 (-)
G1888769 NA non-coding upstream 59334 62118484 ~ 62219550 (-)
G1888773 NA non-coding upstream 62336 62121486 ~ 62224089 (-)
G1887761 NA other downstream 906226 61150056 ~ 61151170 (-)
G1887449 NA other downstream 1231606 60774110 ~ 60825790 (-)
G1886838 NA other downstream 2060333 59995384 ~ 59997063 (-)
G1886825 NA other downstream 2090730 59966362 ~ 59966666 (-)
gpr75 gpr75 other downstream 2705526 59346393 ~ 59351909 (-)
G1888836 LOC106562881 other upstream 201687 62260837 ~ 62267505 (-)
LOC110532867 LOC106562881 other upstream 210472 62258118 ~ 62273944 (-)

Expression


Co-expression Network