G1888374


Basic Information

Item Value
gene id G1888374
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62127787 ~ 62129848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2160261
AGATCAATGACATCCCAAGAAGATTCTGACATCCCAAtgtccatgtacacaaacaatacatttttttatcagAGTGACATTGTTTTAAGTTGTTATTTGGGACAGGCATGGTCCTCAGAGGCATCAATATGATTTTAGACCTTTTTATACGACTAAGCCATGAAGTCTTATATTTTTATTTTGCTCCTTGTCATGGTATGTGTGTTGGGATCAGGACACCCATTATTGGTTTTGTTTTTGACTTGCATCATATAAGGATGGGTGAAGAATTATCTCTGTTTGTTAATTTACTGGCCTTGTGCTCCAGGTTCATGTTTGCCTTTATGTTAGAAATGTAATTTAGGAATAGTGACCCTGGGAGCGTAGCTCCACTACAGGTGGGATTTGTGGTGGGCACATTCAAGAACAGCactgggggaggaggggaatTGTTTGTTCTGTTTACTTTATATTACAATACTGTTTTGTGAGAGACCTTCACTTTATAATATGTGTTTGACTACAGGCTCTCTGAAAATAGGCAATAGAATATCCCACACCCTTATTGGAAATAATCATGACATTTGCGTTCATATATTAAGTGAACAATGTGGCTAAGATAGTAAATCATACATCATTAAACATTAATGGACTGAACGGTCCTGTTAAACGAAGTCCTTATGTCCTTGAAAAAGCTAAAGACTGATGTTGCGTTTATTCAAGAAACACATCTAACATGGGCAGAACATAAAAAGTTAGAGGGAATTGTAGTGTCTGCTTCCAAcgcacactctcaaacacgtagatcccctgaacacaccTCACTTTCCAGcacactttccagctcacactctcaaacacgtagatcccctgaacacagctcactttccagcccactttccagctcacactctcaaacacgtagatcccctgaacacagctcactctccagatcccaatcacctgaattctgatcacacacctgtatgtcattatcacacctatttagttcagttctttgcaccccatcattgtgaggtattggttgttttgtgacacacatcTTTTCGAAGCGTTGGTTTTCCCGTAATTTACTCCTCCCATGTATGATAGTTTTTacctgcctcactaacgatgccttttgcctattccctgcctgtactttagcctattggatttcctgttatcaacctattgtcTGATCTCCCAGACTACATcattagccttttccctgcctgtactttagcctattggatttcctgttatcaacctattgcctgatctcccagactacatcattagccttttccctgcctgtactttagcctattggtgggagggccaagagaccagaggtggcagaacggggTGTAGGGTTTGCTCATAGCCTGAAAGAAGGGAGGGGCAGTTCTTCTTGCTGCTACGTAGGCAAGCACCATGatcttgtagtggatgcaagatttgactggaagccagtggattGTGCAAAGGAGCGGGttgacatgagagaacttgggaaggttgaaaaccaggcgggCTGTAGCATTCTGGATAAATTGCAGAGGTTTCATGGCACAAGCAgagagcccagccaacagagattTATATTAGTCAAGActggagatgacaagtgcctggattaggacctgtgctgcttcctgtgtgaggtatgGTCAtatggatgttgtagagcatgaacctgcggTAGCGAGACGCTGCTTTGATGTTTTCAGAGAACGACAGGCTGTTGTCCAGgttcacgccaaggttctttgcactctgggtgtgcgacactgtggagttgtcaattGTGATGGAGAGGTGTGAGGATATGAATGAGccaagtgacttggtgtatagagagaagaggagataaacTAGAACAGAACCC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106605384, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2160261 True 1870 lncRNA 0.43 3 62127787 62129848

Neighbor

gene id symbol gene type direction distance location
LOC110531647 LOC106592896 coding upstream 13555 62078013 ~ 62114232 (+)
LOC118943931 NA coding upstream 89103 62036002 ~ 62038690 (+)
LOC110516873 LOC105008825 coding upstream 137131 61823465 ~ 61990656 (+)
LOC118943839 LOC106577359 coding upstream 312113 61743749 ~ 61815674 (+)
LOC118943838 LOC106577289 coding upstream 507590 61615982 ~ 61620197 (+)
LOC110516194 LOC106562987 coding downstream 161891 62291739 ~ 62339471 (+)
LOC118936589 LOC106562987 coding downstream 213553 62343401 ~ 62415570 (+)
LOC118943939 NA coding downstream 285812 62415660 ~ 62416166 (+)
LOC118943940 LOC106563028 coding downstream 295996 62425844 ~ 62471811 (+)
LOC110531772 LOC106569852 coding downstream 351783 62481631 ~ 62483395 (+)
G1888366 NA non-coding upstream 70031 62057407 ~ 62057756 (+)
G1888364 NA non-coding upstream 73738 62053358 ~ 62054049 (+)
G1888363 NA non-coding upstream 74617 62048487 ~ 62053170 (+)
G1888352 NA non-coding downstream 1065 62130913 ~ 62131886 (+)
G1888376 NA non-coding downstream 2384 62132232 ~ 62132715 (+)
G1888377 LOC106592896 non-coding downstream 3595 62133443 ~ 62241240 (+)
G1888388 NA non-coding downstream 21809 62151657 ~ 62152414 (+)
G1888391 NA non-coding downstream 26073 62155921 ~ 62156421 (+)
G1888298 NA other upstream 199930 61926746 ~ 61927857 (+)
G1887835 NA other upstream 850024 61276775 ~ 61277763 (+)
slc35f3b slc35f3 other upstream 1957007 60012705 ~ 60174129 (+)
G1886561 NA other upstream 2339798 59783986 ~ 59787989 (+)
G1886560 NA other upstream 2341692 59749718 ~ 59786095 (+)
G1888544 NA other downstream 434677 62564525 ~ 62565083 (+)

Expression


Co-expression Network