XLOC_037902 (si:dkey-100n23.5)


Basic Information

Item Value
gene id XLOC_037902
gene name si:dkey-100n23.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 30248571 ~ 30259512 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074414
GTTTCGTATCGTTTGTCCTTCTGCTTACACCGTAGTTGTCAATGTGGCTGTGCTGCTATCATGATGTGTACACTTCACATCAAAATACAAGTTAGTAAAAAGAAAGATTAATTATGGGAGATGAGCATCCAGTCCAGGCTAACAACACAAGCAGCTCCCGCTGTACTTTCTTCAAAGACGAATATCAATGTGATGTGATTCTTACAGTGAAAAGAGCAACAGGGACATTTTCAATTCTGGCATGTTTCTTCATGCTCTGTTTGATATGGCTGCTGCGCCGAAACAACTCTCTAGCTCAGAAAATGGTGATCAACCTGACAGTAGCTGCATTGTTTGACAGTGTTGCTTATGTTATGGGAGAGTCTCATCCAGAAGGATCGCTGTGTAATTTTCAAGCCTGGTGGCTGACGTATTTTGACTGGACTGCACTGGTTTGGGTTTGTCTTATTACTTTCAATCTCTACCTGAACCTAGTAAGAGAAATCAGGACAGAACATTATAGAATACGGTATCATGTGGTGGCATGGGGTGTTCCTGTGATCATGTCCACCATCCCCCTGATGGCTGGATACTACGGTCCTGCAGGAGCCTGGTGTTGGATCACAGATGATCATGTTGGGTGGAGATTTGGCATATGGTACATCCCATTATTCAGCCTGATTATCGTCATGATCTGCTGTTATGCTCGAATCATCTGCGTGGCCAACGAGAGGatgCGTTCGTGGTTGGGCACCTTTAATCCGGAAAGGGAGAGAAGGAagATCTCCTTAGCTGAAGAGACCAGACCGCTGAAGTGGTATCCCTCTGTCTATCTGCTTGTCTCTATCTTCCCTCTTATAAATCGACTTCATAATGCTGCTTACCCAAAGGATCCAGTGTTTTCTCTGACGTTACTGCATGTGCTTAGTGCACCGTTGCATGGGCTTGCGAATGCTCTCGTCTTCGGTAAAGACACCTGGAGTCAAATGAGTGTAACAGGAATAAAGATGGCGATTCAGTCTCGGTTGTGTGACAGCACAAGGATTGAAGAGTACCATGCTGTAAATGTAAGATACACACATGAGCTCGATGCGAACTCCGATTCAGACGAGGAAGACGGCAATGTCCTCTTCTACAGTCCGGATATGGCCTTAAAAGACAGGGCATCATGGGAGAATGTTTAGAGAAGTGGCTTATTTGTGCATATTTTCACACACTCCACCTTTGAAGAATTTCATTCAGTGTTTGTTTATCAAGCTTTTGTATTGACACTTTTTACTATAGTTGGAAAACAGAAAAAAGTTGTTGATTAAAAAGACTTTTTTTGCCTTTAATGACGGGTAGCATCATAGCATTTGTACTGTATTAATGAGGCAAAGCAATTTAAGCTGTTTACTGCCTTAACGTGTTCCGTTGTGTATAAAATCGAATCAAAGACTGCTTTTTCTATTTCATTCAGCTGAATATCTCAGACTTAGGATATGCTTTGAGAACAATGAGCAtgttttattatcatatttatgaaaatgtatgctatatttttgtattgtttgcaacaaagtttatatataaatctaTTAACATTTA
>TCONS_00074415
GAAGATTCCATTAGGTATGCTTTTAAACTATTTTGAACTGCAAGGACACAAGACATGTCCTTacaaaccaccaaaaccagtacacacattTATTACACATACAGCTTCTCAGTGTTCTTCACATCTACATGTGTTCTTCACATCTACATGTGTTTTTCAGACGGTATCATGTGGTGGCATGGGGTGTTCCTGTGATCATGTCCACCATCCCCCTGATGGCTGGATACTACGGTCCTGCAGGAGCCTGGTGTTGGATCACAGATGATCATGTTGGGTGGAGATTTGGCATATGGTACATCCCATTATTCAGCCTGATTATCGTCATGATCTGCTGTTATGCTCGAATCATCTGCGTGGCCAACGAGAGGatgCGTTCGTGGTTGGGCACCTTTAATCCGGAAAGGGAGAGAAGGAagATCTCCTTAGCTGAAGAGACCAGACCGCTGAAGTGGTATCCCTCTGTCTATCTGCTTGTCTCTATCTTCCCTCTTATAAATCGACTTCATAATGCTGCTTACCCAAAGGATCCAGTGTTTTCTCTGACGTTACTGCATGTGCTTAGTGCACCGTTGCATGGGCTTGCGAATGCTCTCGTCTTCGGTAAAGACACCTGGAGTCAAATGAGTGTAACAGGAATAAAGATGGCGATTCAGTCTCGGTTGTGTGACAGCACAAGGATTGAAGAGTACCATGCTGTAAATGTAAGA
>TCONS_00074416
GTAGTTGTCAATGTGGCTGTGCTGCTATCATGATGTGTACACTTCACATCAAAATACAAGTTAGTAAAAAGAAAGATTAATTATGGGAGATGAGCATCCAGTCCAGGCTAACAACACAAGCAGCTCCCGCTGTACTTTCTTCAAAGACGAATATCAATGTTGAAAAGAGCAACAGGGACATTTTCAATTCTGGCATGTTTCTTCATGCTCTGTTTGATATGGCTGCTGCGCCGAAACAACTCTCTAGCTCAGAAAATGGTGATCAACCTGACAGTAGCTGCATTGTTTGACAGTGTTGCTTATGTTATGGGAGAGTCTCATCCAGAAGGATCGCTGTGTAATTTTCAAGCCTGGTGGCTGACGTATTTTGACTGGACTGCACTGGTTTGGGTTTGTCTTATTACTTTCAATCTCTACCTGAACCTAGTAAGAGAAATCAGGACAGAACATTATAGAATACGGTATCATGTGGTGGCATGGGGTGTTCCTGTGATCATGTCCACCATCCCCCTGATGGCTGGATACTACGGTCCTGCAGGAGCCTGGTGTTGGATCACAGATGATCATGTTGGGTGGAGATTTGGCATATGGTACATCCCATTATTCAGCCTGATTATCGTCATGATCTGCTGTTATGCTCGAATCATCTGCGTGGCCAACGAGAGGatgCGTTCGTGGTTGGGCACCTTTAATCCGGAAAGGGAGAGAAGGAagATCTCCTTAGCTGAAGAGACCAGACCGCTGAAGTGGTATCCCTCTGTCTATCTGCTTGTCTCTATCTTCCCTCTTATAAATCGACTTCATAATG
>TCONS_00074417
GTGTACACTTCACATCAAAATACAAGTTAGTAAAAAGAAAGATTAATTATGGGAGATGAGCATCCAGTCCAGGCTAACAACACAAGCAGCTCCCGCTGTACTTTCTTCAAAGACGAATATCAATGTGATGTGATTCTTACAGTGAAAAGAGCAACAGGGACATTTTCAATTCTGGCATGTTTCTTCATGCTCTGTTTGATATGGCTGCTGCGCCGAAACAACTCTCTAGCTCAGatcttttcCTTTGTTTTTCAGAAAATGGTGATCAACCTGACAGTAGCTGCATTGTTTGACAGTGTTGCTTATGTTATGGGAGAGTCTCATCCAGAAGGATCGCTGTGTAATTTTCAAGCCTGGTGGCTGACGTATTTTGACTGGACTGCACTGGTTTGGGTTTGTCTTATTACTTTCAATCTCTACCTGAACCTAGTAAGAGAAATCAGGACAGAACATTATAGAATACGGTATCATGTGGTGGCATGGGGTGTTCCTGTGATCATGTCCACCATCCCCCTGATGGCTGGATACTACGGTCCTGCAGGAGCCTGGTGTTGGATCACAGATGATCATGTTGGGTGGAGATTTGGCATATGGTACATCCCATTATTCAGCCTGATTATCGTCATGATCTGCTGTTATGCTCGAATCATCTGCGTGGCCAACGAGAGGatgCGTTCGTGGTTGGGCACCTTTAATCCGGAAAGGGAGAGAAGGAagATCTCCTTAGCTGAAGAGACCAGACCGCTGAAGTGGTATCCCTCTGTCTATCTGCTTGTCTCTATCTTCCCTCTTATAAATCG
>TCONS_00074418
CTGGAATTCTTATTTGTTAGCCCTTATGCTAACCAAAACATGACATCATACTTTCCATGGGATGTGATTCTTACAGTGAAAAGAGCAACAGGGACATTTTCAATTCTGGCATGTTTCTTCATGCTCTGTTTGATATGGCTGCTGCGCCGAAACAACTCTCTAGCTCAGAAAATGGTGATCAACCTGACAGTAGCTGCATTGTTTGACAGTGTTGCTTATGTTATGGGAGAGTCTCATCCAGAAGGATCGCTGTGTAATTTTCAAGCCTGGTGGCTGACGTATTTTGACTGGACTGCACTGGTTTGGGTTTGTCTTATTACTTTCAATCTCTACCTGAACCTAGTAAGAGAAATCAGGACAGAACATTATAGAATACGGTATCATGTGGTGGCATGGGGTGTTCCTGTGATCATGTCCACCATCCCCCTGATGGCTGGATACTACGGTCCTGCAGGAGCCTGGTGTTGGATCACAGATGATCATGTTGGGTGGAGATTTGGCATATGGTACATCCCATTATTCAGCCTGATTATCGTCATGATCTGCTGTTATGCTCGAATCATCTGCGTGGCCAACGAGAGGatgCGTTCGTGGTTGGGCACCTTTAATCCGGAAAGGGAGAGAAGGAagATCTCCTTAGCTGAAGAGACCAGACCGCTGAAGTGGTATCCCTCTGTCTATCTGCTTGTCTCTATCTTCCCTCTTATAAA
>TCONS_00074419
GGAAActagtttatttaaaatgaaggtgctactaaatctgattaaattaaaagCTATTTTTTGTTGTCTTTATTGATTTTAAGACACGTGCGTTATAGAGGATGTGATTCTTACAGTGAAAAGAGCAACAGGGACATTTTCAATTCTGGCATGTTTCTTCATGCTCTGTTTGATATGGCTGCTGCGCCGAAACAACTCTCTAGCTCAGAAAATGGTGATCAACCTGACAGTAGCTGCATTGTTTGACAGTGTTGCTTATGTTATGGGAGAGTCTCATCCAGAAGGATCGCTGTGTAATTTTCAAGCCTGGTGGCTGACGTATTTTGACTGGACTGCACTGGTTTGGGTTTGTCTTATTACTTTCAATCTCTACCTGAACCTAGTAAGAGAAATCAGGACAGAACATTATAGAATACGGTATCATGTGGTGGCATGGGGTGTTCCTGTGATCATGTCCACCATCCCCCTGATGGCTGGATACTACGGTCCTGCAGGAGCCTGGTGTTGGATCACAGATGATCATGTTGGGTGGAGATTTGGCAT

Function

symbol description
si:dkey-100n23.5 Predicted to enable G protein-coupled receptor activity and cAMP binding activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0030552 cAMP binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-347 Predicted to enable G protein-coupled receptor activity and cAMP binding activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000086911

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074414 False 1566 mRNA 0.41 13 30248571 30259512
TCONS_00074415 False 707 lncRNA 0.45 7 30249085 30255337
TCONS_00074416 False 808 mRNA 0.45 12 30249415 30259481
TCONS_00074417 False 800 mRNA 0.44 11 30251966 30259447
TCONS_00074418 False 710 mRNA 0.45 11 30251969 30259295
TCONS_00074419 True 543 mRNA 0.42 8 30254963 30258957

Neighbor

gene id symbol gene type direction distance location
XLOC_037901 SENP7 coding downstream 537 30217828 ~ 30248034 (-)
XLOC_037900 impg2a coding downstream 58058 30188764 ~ 30190513 (-)
XLOC_037899 abi3bpa coding downstream 82950 30132498 ~ 30165621 (-)
XLOC_037898 BX322575.1 coding downstream 140611 30104920 ~ 30107960 (-)
XLOC_037897 dcbld2 coding downstream 194393 30013667 ~ 30054178 (-)
XLOC_037903 mid1ip1a coding upstream 3676 30263188 ~ 30264415 (-)
XLOC_037904 otc coding upstream 8528 30268040 ~ 30274412 (-)
XLOC_037905 BX571713.1 coding upstream 37163 30296675 ~ 30296791 (-)
XLOC_037906 sytl5 coding upstream 63950 30323462 ~ 30363770 (-)
XLOC_037907 asb11 coding upstream 105155 30364667 ~ 30371247 (-)
XLOC_037896 CR749776.1 non-coding downstream 440507 29807947 ~ 29808064 (-)
XLOC_037894 NA non-coding downstream 541314 29682197 ~ 29707257 (-)
XLOC_037893 NA non-coding downstream 585946 29652041 ~ 29662625 (-)
XLOC_037889 NA non-coding downstream 738596 29506420 ~ 29509975 (-)
XLOC_037910 NA non-coding upstream 199192 30458704 ~ 30474478 (-)
XLOC_037911 NA non-coding upstream 230993 30490505 ~ 30503378 (-)
XLOC_037912 NA non-coding upstream 258405 30517917 ~ 30525279 (-)
XLOC_037915 BX571809.1 non-coding upstream 417958 30677470 ~ 30680018 (-)

Expression


Co-expression Network