G1888408


Basic Information

Item Value
gene id G1888408
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62259526 ~ 62262559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2160325
ACAACAGTGTTTATTGCAACCACACTGAAAGAACCTTAAAACATCTCATTGGTAGGGGGATCTAAAAagaaatataaaaacatattcaagctaaatcaaattgtattttattttgcaGATATTGTGTTTATATAATCACAGTGATTGTAAAGATCAGTTTCAGTTTACTGAATATATATATGTCCTCTTTATTTTACAAAGAAAATGAAAAGTAAAGATACAGAAGAATATAAGAAAACACAGAATAGCAGCTTAAACAAAAAACAGTAAGAGGATCCTGGCTTTATCTATCCTGGGTACCAGTAAGAGGATCCTGGCTTTCTCTATCCTGGGTACTAGTAAGAGGATCCTGGCTTTCTCTATCCTGGGTACTAGTAAGAGGATCCTGGCTTTCTCTATCCTGGGTTCTAGTAAGAGGATCCTGGCTTTCTCTAGCCTGGGTACTAGTAAGAGGATCCTGGCTTTCTCTATCCTGGGTTCTAGTAAGAGGATCCTGGCTTTCTCTATCCTGGGTACTAGTAAGAGGATCCTGTATTTCTCTATCCTGTGTACTAGTAAGAGGATCCTGGCTTTCTCTATCCTGGGTACTAGTAAGAGGATCCTGTATTTCTCTATCCTGGGTACTAGTAAGAGGATCCTGGCTTTCTCTAGACTGGATACCAGTATGTTTGTGCTAATATTCCACTTCATGTCATGCCAAACATAATTTTTGGCATATGACAaagtacaaggagtggaatgttagtaCAGAACAGGTCTGGATTTCAGGCTTTTTCACATGAGCTTATTTCTACTACTACCAAAATGCAGCTACTGGGGGGATTCCCTTTAGGCTATGGCCACACATTCATCTATATGGCTTGACTTGTCTTTGCCCCATTTCCTCCACTAATACTGAAAGATCTCTCGCCCAGTGCAATAAGAAACAGTGTTTGGATCAATGATGAAGGGTAACAACATGTGAGAAACCTCATCAGCATCACTCAATACAGGGCAGACGAGGTAGCCGGTTAAGTTAGACGTATAGAGAGAGAGCCTTGGGATTCCAGAGTACAAGATACAATTAAAGGGACAGTAGGTCATGAAAATGAGTAGTACCATCTAGAGGGACACTTCAGTgtgaagagaggagcagaggagagatggagggggagagggggggagtgataGGGACTATGTTCCAAAGTCCACACTTGCATACCACTTACTTAGAATGCATGTCCAACACATTGCTTCATTATAGGTGGTAGTCTAGTATGTCCAACACATTGATTCTTTATAGGTGGTAGTCTAGTATGCTGGTGTGGACATTGGAACCAAAGAGAGCAACAGGAGTCAGGTAGCAGCAGTCGGAGGGGAGAGTGTGTACAGCAGCCTCATCTCTGGCCCTGTAGGTAGGGGGCTCAGTGGGAGGACGTACCATCCAGACGGTTGACGCCAAGGCCACTGCTGCTCCAGTCAAACTGGGACCAAGGCTGGGGGGCCCCCTGCTGCCGGAAGGAACAAACTG

Function

NR:

description
proteoglycan 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2160325 True 1510 lncRNA 0.43 4 62259526 62262559

Neighbor

gene id symbol gene type direction distance location
LOC110531647 LOC106592896 coding upstream 145294 62078013 ~ 62114232 (+)
LOC118943931 NA coding upstream 220842 62036002 ~ 62038690 (+)
LOC110516873 LOC105008825 coding upstream 268870 61823465 ~ 61990656 (+)
LOC118943839 LOC106577359 coding upstream 443852 61743749 ~ 61815674 (+)
LOC118943838 LOC106577289 coding upstream 639329 61615982 ~ 61620197 (+)
LOC110516194 LOC106562987 coding downstream 29180 62291739 ~ 62339471 (+)
LOC118936589 LOC106562987 coding downstream 80842 62343401 ~ 62415570 (+)
LOC118943939 NA coding downstream 153101 62415660 ~ 62416166 (+)
LOC118943940 LOC106563028 coding downstream 163285 62425844 ~ 62471811 (+)
LOC110531772 LOC106569852 coding downstream 219072 62481631 ~ 62483395 (+)
G1888377 LOC106592896 non-coding upstream 18286 62133443 ~ 62241240 (+)
G1888403 NA non-coding upstream 65234 62193248 ~ 62194292 (+)
G1888392 NA non-coding upstream 68339 62158290 ~ 62191187 (+)
G1888373 NA non-coding upstream 80946 62122757 ~ 62178580 (+)
G1888425 NA non-coding downstream 8036 62270595 ~ 62271591 (+)
G1888427 NA non-coding downstream 12483 62275042 ~ 62275258 (+)
G1888429 NA non-coding downstream 13900 62276459 ~ 62285346 (+)
G1888450 NA non-coding downstream 40088 62302647 ~ 62303241 (+)
G1888454 NA non-coding downstream 59801 62322360 ~ 62382279 (+)
G1888298 NA other upstream 331669 61926746 ~ 61927857 (+)
G1887835 NA other upstream 981763 61276775 ~ 61277763 (+)
slc35f3b slc35f3 other upstream 2088746 60012705 ~ 60174129 (+)
G1886561 NA other upstream 2471537 59783986 ~ 59787989 (+)
G1886560 NA other upstream 2473431 59749718 ~ 59786095 (+)
G1888544 NA other downstream 301966 62564525 ~ 62565083 (+)

Expression


Co-expression Network