G1888836 (LOC106562881)


Basic Information

Item Value
gene id G1888836
gene name LOC106562881
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62260837 ~ 62267505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2160887
GAGGTGTTGAATGTGCTCAGCCTCAGGGCTCTGCTAGAGACTCTAGACACACAGCCTGAGGAAGAGGAGACGAAGGGGCTCAACCACACTACACACTGGGTTCCTAGGGGCGCGTGGCGGCAGCCTCAGGACCTCCACGATGCCGTGGGCCTGGGATTCCAGTGGGGCGGTTCCCATAGCAACAGGGCCCTGCTCCGCTGTCTGGGGATGGACACCAGAAACATGTTGTTCACTGGTCAGAGAAAGCAGCCTGTCATAGTTCCTGTGTTTGCAGCCAGCCTGggaATGTTAGAGCCCACCAAAGAGCCACTGAGACCAGCTTCAACTGCGGAGAAGACTGCTGCCACAGCACAAGCACTTCCTGGGTCACAGGAAACCACCACCACCTCGTCAATACAGCAGGGGGCCCCCCAGCCTTGGTCCCAGTTTGACTGGAGCAGCAGTGGCCTTGGCGTCAACCGTCTGGATGGTACGTCCTCCCACTGAGCCCCCTACCTACAGGGCCAGAGATGAGGCTGCTGTACACACTCTCCCCTCCGACTGCTGCTACCTGACTCCTGTTGCTCTCTTTGGTTCCAATGTCCACACCAGCATACTAGACTACCACCTATAATGAATCAATGTGTTGGACATACTAGACTACCACCTATAAAGAATCAATGTGTTGGACATACTAGACTACCACCTATAATGAAGCAATGTGTTGGACATACTAGACTACCACCTATAATGAATCAATGTGTTGGACATACTAGACTACCACCTATAATGAAGCAATGTGTTGGACATGCATTCTAAGTAAGTGGTATGCAAGTGTGGACTTTGGAACATAGTCCCtatcactccccccctctccccctccatctctcctctgctcctctcttcacACTGAAGTGTCCCTCTAGATGGTACTACTCATTTTCATGACCTACTGTCCCTTTAATTGTATCTTGTACTCTGGAATCCCAAGGCTCTCTCTCTATACGTCTAACTTAACCGGCTACCTCGTCTGCCCTGTATTGAGTGATGCTGATGAGGTTTCTCACATGTTGTTACCCTTCATCATTGATCCAAACACTGTTTCTTATTGCACTGGGCGAGAGATCTTTCAGTATTAGTGGAGGAAATGGGGCAAAGACAAGTCAAGCCATATAGATGAATGTGTGGCCATAGCCTAAAGGGAATCCCCCCAGTAGCTGCATTTTGGTAGTAGTAGAAATAAGCTCATGTGAAAAAGCCTGAAATCCAGACCTGTTCTGtactaacattccactccttgtacttTGTCATATGCCAAAAATTATGTTTGGCATGACATGAAGTGGAATATTAGCACAAACATACTGGTATCCAGTCTAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAATACAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACACAGGATAGAGAAATACAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGAACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGCTAGAGAAAGCCAGGATCCTCTTACTAGAACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTGGTACCCAGGATAGATAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAACCCAGGATAGAGAAAGCCAGGATCCTCTTACTGGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTGGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCATCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCATCTTACTAGTACCCAGGATAGAGAAAGCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCATCTTACTAGTACCC

Function

NR:

description
aftiphilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2160887 True 2102 TUCP 0.48 5 62260837 62267505

Neighbor

gene id symbol gene type direction distance location
LOC118943933 LOC106592896 coding downstream 18133 62220901 ~ 62242704 (-)
LOC118943936 LOC106562881 coding downstream 51155 62207261 ~ 62209682 (-)
LOC118943935 LOC106592896 coding downstream 58209 62167577 ~ 62202628 (-)
LOC118943840 NA coding downstream 96513 62152136 ~ 62164324 (-)
LOC118943934 LOC106592896 coding downstream 113109 62119930 ~ 62147728 (-)
LOC118943938 LOC106577312 coding upstream 15832 62276439 ~ 62310445 (-)
LOC118943941 LOC105008298 coding upstream 224376 62491881 ~ 62560536 (-)
LOC118936590 LOC106577388 coding upstream 293173 62560678 ~ 62570675 (-)
LOC118943942 LOC106577315 coding upstream 502530 62770035 ~ 62776655 (-)
LOC118943943 LOC102782193 coding upstream 513594 62781099 ~ 62876729 (-)
G1888761 LOC106592896 non-coding downstream 19305 62199590 ~ 62241532 (-)
G1888773 NA non-coding downstream 36748 62121486 ~ 62224089 (-)
G1888832 NA non-coding downstream 38667 62168771 ~ 62222170 (-)
G1888769 NA non-coding downstream 41287 62118484 ~ 62219550 (-)
G1888831 NA non-coding downstream 94378 62165392 ~ 62166459 (-)
LOC110532867 LOC106562881 non-coding upstream 80 62258118 ~ 62273944 (-)
G1888862 NA non-coding upstream 49101 62316606 ~ 62316954 (-)
G1888879 NA non-coding upstream 79742 62347247 ~ 62347941 (-)
G1888893 NA non-coding upstream 112182 62379687 ~ 62381107 (-)
G1887761 NA other downstream 1109667 61150056 ~ 61151170 (-)
G1887449 NA other downstream 1435047 60774110 ~ 60825790 (-)
G1886838 NA other downstream 2263774 59995384 ~ 59997063 (-)
G1886825 NA other downstream 2294171 59966362 ~ 59966666 (-)

Expression


Co-expression Network