G1888429


Basic Information

Item Value
gene id G1888429
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62276459 ~ 62285346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2160363
TTATTGGTCTACGAAGTAGTCGTTTTAACAGAAGCATGAGAAACGAAAACGTTTGACGAGGAAGAGAGCACAACTAGTGGAATTACTCCGTTAATGAACACAAACAAAACATGCTCTAAATGCAAAATGTTACAATTCTCCATGAATGACTCAACTTGGTTTCATTCAGTTAGGAAATAGTGTCTAATAAGTCTgcgtgtcccaaatgacacactattccctacatagtgcactacatttgaccagttgaaagtagtgctctatataaaGGAATAGATTGCCCTTtgggacacagacaaagagtTGTATTGCTCCTGTGGGACTGGTTATATGCAGGATCCTCTGTTGAAAACCCAGAATAGAGAATGAACCTGTTAACCAGGGATCTTCTTtcctgagtcagtcagtcagacaacaCTAGCTACATCAGACAGAAACAACCCCTTTACATGTTGTAGCAGACAGACTTATTTTACACTGGATCTGGTCAAACTTCTCATCCTAAATCCTTTATCCTCATCTGATGACAATTGGTGAGAGAACAACTTGATCAAACCTAACTTTATAGATAGTCTTGTAATTCAAAAGCATTCATCTTATAATATTTAATTTAACAGGcactgttttaaaaaatatataaaaatggtCTTGTTCTTGATAAATGAAAAGGGAAACCCTATAGTacaacatcaacaacagcacAACCTAACCTACATATGACACTCCATAATAACTACAGTTTGCTTTTCCAAAAAAGCAATAATAattactgcatcccaaatgacaccctattctctatgtaccgtagtgcactactttgaaccagggcccatagagctctggtcaaaagaagtgtcACTTGttaaggaatagggtaccatttggtacATACCCATTGACTCGTGTCTTTTCCTTCCAACAGCAGTTTAATGCTTCACTAGGCTATAACACCACTGGTAGAAAGAACAAAAATACATCTCACATGTTTTGTAAAGTCTACAAACAAAAAACTAGGAAAACCTATAATCTTGGCTTCTCAGATATACAATATGCTCAGATAGTACTTGTATTCTACAACCAAACCGGGGTTCAATTACTACTTGAAATCTTTCAAAAGCATTCCGTTTGCTCTCGTCTAGTATGCCTGGAGTGCCTGATGGGCGGGGCTTGCAGTCCTtgtgactattctattggttccattgtgccagtCAAGCtcagataaagtatttgaaatgatatcaaatagtatttaaacccaggtctgtCAACAACACAGGTGTACCGAAACGCTTTGCCTATAAAGCACAGACACATTTTCTCATGTAAAAACCAAGGCCATGTTCAAAATATGTAGAAAATGGGAAGGCATGTTAACATCATCAGATTACAATCGGGGAGCAATGACATTCAGTTCAAACCAAAAGTCTTATTTTTATAAAGTCTTACTTGTTTTTCTGCTGTTTTTCTGAGGCCAATGTAGGTCAGAGTGGGTTGAATGGTATTTGCGTTGTGGCAGGCTGCAGCTGTAGACCCAAGGGCTGAGTTCAATCAAACGCGCACTGCAGGTATTTCACATTGTGGAAAAGTCCTACTAGCTCCTGTGTTCCAGCAATACACCATCTCGTTCAAATCCAATAACAGTAACTCATTTCAATCAAATCCAAACCTGATTTCTTCCAATTAGCCTTGATTGATTCATCAGTATTtataccgttttttttttttgtaaaaagacCAATGTAATGTTTTTTCTGTACTGCATGTTTGCTTGAATGTCAGTCCTATTAGAGGAGTTAGGATCATGAGACACAAAGTTACAAAACAAGCCTTTTAGGGGCTTAGTCagtagtggggcggcagggtagcctagtggttagagcgttggactagctgcaagttcatatccccagctgacaaggtacaaatttgtcgttctgcccagttaacaggcagttaacccactgttcctaggcgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaataaaaattaaaaggaTGCACCATTTACTAGGCTGTTGCAGATAGAGATATGAAGTATAGACTGGTTACCATTCCCTATTTCACATTAGACAGTCATGACTGTTCTACACAATATATTTCTATGTAAATGTTGTTGTGCCCCTCCAGAATAAGCCCCCGCCCCATGTTGTGAATCAGGAAGTGTTTGTGTTATCTCCCTCCCCCCGGTCTTCCTGGATATACAGCGTCACGGGAGTGAGTGACCTCTCAAGTTGACCCCTAGACCACAACTGACAGGCTGAACCACAGGCGAGATGCTAGAGTGACAGGCGAGATGCTAGAGTAACAGGCTGAACCACAGGCGAGATGACATGTATGACATTATTAAGAATAGAACACGTCTTTTATTCTGCCTCATGGTTTTAACCACAATTTGGTATTTTATACATAGATGTATTATTAGGTCTCTTAAGGATTTCCAATGTGAATCATATAGGCCTACTTATTTTCCCATGGGGCAACTGGATATTTGTTTGTATTTAAAATGAAGTAGTTTCACTAGGGATGTTTTCCACTCACTACAGCCAGAAGTTGTAGTTTCACGAGGGATGTTTTCAACTCACTACAGCCAGAAGTTGTAGTTTCACGAGGGATGTTTTCAACTCACTACAGCCAGAAGTTGTAGTTTCACGAGGGATGTTTTCAACTCACTACAGCCAGAAGTTGTAGTTTCACGAGGGATGTTTTCCCACTCACTACAGCCAGAAGGTGTGGTTTCACGAGGGATGTTTTCCACTCACTACAGCCAGAAGGTGTGGTTTCACGAGGCATGTTTTCAACTCACTACAGCCAGAAGTTGTAGTTTCACGAGGGATGTTTTCCACTCACTACAGCCAGAAGTTGTAGTTTCACGAGGGATGTTTTCAACTCACTACAGCCAGATCAGCACCGACAATGAAATCAGCCCCCCGAAACACACCCAGACTAACACAACATTAAGGATACAATACTGTTGAGGTCAGTGCATTGGGCTGGTTCATAcaaactctctctccctgtcctccgtATTGCCTTCCTAATAGCCTACTGCAGTTTCCTTATGGAAATGAGTGCCTGTCATGCCAAACATAAAAAATAGTTCTCCATCTTAGTACCTCAGGAAAACCCTGTGTGACCATCcaggagaaaaagacagagaggaggacgTTATTGCTCTCTCACAGAAAAGACCTGTGCATATGCAGCCTACTGAACAATTCTGCATCCCACAGAATATTGTCATGGATTGCCTACTGTAATGATGTTCAGAGACCGAACGTCTCATatagcacacacacattcattaccaACCACTCACTATCCCCCCATGCTGAATGTGATGCACTGTTCAGGGTTCAGTCAGTGCAGTGGCCTATCTGGGCAAAACCAAGGAAGGGACCATTTGAAGCATCTTACAGGGGTAAACCAAGGAAGGGACCATTTGAAGCACATTACAGGGGTAAACCAAGGAAGGGACCATTTGAAGCATCTTACAGGGGGATGTCTGACTACAGCAAAGAAAATAAACACCAAACCCCTCAACCTTCAAAGTTATCATGACTTAAAGGTGCTACACCCCCAAAACCCAATTTCTCCGTAACATGAAGGAGACTCACAATTGAGCCTTTTACTTTCTGTTTTGGTCcagcagcttcaaacagctggaaAAACTATATATGTTTTATTATTGAACATATGTTTAGTTacacccctcaaactcaactctggacctcccaaaaaaaagcagtggaactgtcttggacaccaggtgggtgatattaatgatcagtaagaacagaaaaccagcaggctctggacttCGTAGGGTCAGAGGTGAATACCCCTGCCCTACACTATTcagtgcttgttttctcacataaACTGACATTGAGCGAACAGTGTAGAATTTTTTTAATCAAGAAATTACAGAGAGATTTCTACATTGGCCACCTGACCCGATTTCCAatagataacacagccacaaagtcaaaacagCTTTCCCATTTTGACAACAGATGCCTCTCCAATGGGAGAAATCAATAGGCAAATATTACAGCCATTTTTTAAATCCTGTGTAGCACCTTGAATCCAAAGTCCCTCCCTACTCATCTACAACTCAGAGCTGACTTGCTCCCAACAGGAAagccgcatcccaaatggcaccctatcccatacattgggccctggtcaaaagtagtgcacttaggGTCAAACGTGTCTTGGGTTAGGGTTGAAGTTAGGGTCAAAGTTGTGCATTATGTAGGGGCAACCGAAGAATGAGCGCTCCCTCCAACAACTAAGCCCAGTAAGAGacaatagagagaaggagagatccaACAACTAAGCCCAGTAAGAGACCATATAGAGAAGGAGAGATCCAACAACTAAGCCCAGTAAGAGacaatagagagaaggagagatccaACAACTAAGCCCAGTAAGAGACCATATAGAGAAGGAGAGATCCAACAACTAAGCCCAGTAAGAGacaatagAGAGAAGGAGAGATCCAACAACTAAGCCCAGTAAGAGACAATAGAGAGCTTTGATGGAGCACAATAGCTCCCCTTGGCACCATGTGATGTCCGTGTGCCCCATTCTTGCTCTCCTGGCTCGGttttgagagagtgagagatagatagagagatgcaGTGggtccatagagagagagagatgcattgggccatagagagagaaagatgggtcgagagagagagatgcattggGCCATAGACATGGGGCAGTGTGTTGTTAGAGGCAtatcagtgatgtagtggtaattAACAAATCGGTGAGTGAACTCTGATCCCTGTTTGTGGTGAGTAAAGTAACGCTCTATATATTTTCAAATAATTTTTCTGCAATAGGAGGGTAAATGCTTACGCAGAATACAAAAGGTGTGTAAGCTGCGATCACGTGAATTTACCCTCCACTAAACCACTGAGTCATATGATGCTCCACTAAACCACTGAGTCATATGATGCTCCACTAAACCACTGAGTCATATGATGCTCCACTAAACCACTGAGTCATATGATGCTCCACTAAACCACTGAGTCATATGATGCTCCACTAAACCACTGAGTCATATGATGCTCCACTAAACCACTGAGTCATATGACAGTTATTGGTGAACAGTAGTAGCTCTGTGTGTTGATGAAGTGGTGGGcactggtccaaagtagtgcactaaataggtaatacactcttagaaaaaagcaATCCAAAAGGGctcttctgctgtccccatatgagaacccattctggttccaggtagaacccattcTGGTTCCAGGTTAACACCCATTCTGGTTCCAGGTTGAACCCATTCTGGTTCCAGGTTAACACCcattctggttccaggtagatagcatctttttttctaggagtgtaaggtgccatttcagatgcagaaattggttgaatcaatgttgtttccacgtcatttcaacaacccAAAAAGTAtttgtgatgacgttgaatcaatgtggaaaactgattggatttgcaacaAGTCATCAACAAAAGGATATTTATTTTCACCCAacgtttaacctaaatccaatgacatggtggaattctttgttgatttcacgttgaattcacgttaatTGCCAACTCAACcaaatttaaatcaaaactagatgttgaactgacgtctgtgcccagctGGTATGCTACCATAGAAAAACATGGCTGCTGTACATTCATAACACCATTCAGCCTTCCTATTCTTCACAACAATCAACCGCTAATCGATAACCGCTAACCGCTAGCTAACGGAACCgtctgtaaagggttagggttagggtaccgGTTACAGTTTCGGGTCAACTGTTTTTTATTTTGGGCAAAACATTTCACTTCGGTGTTCCCTAAAGAATACGACCCTGGTTTAAGTGTGGAAGAGAATCCACCATTTGCATATACAGTAATAATCTGGTCTGTGATAGCGAGGTTTGACTGAATGGTTGTTTAGGCTGGCCATCGCTGGGTGTGTTTTCACTATGGGGTTTTTCTTCATTTACAAGTCAGAGTCCAGTTAAGCAAACTCCTTAAAAGGATAGTTCACTCCAAGATAAACATCCTAGCAAATTTTTCAAGCCTAGAAACACCACCTGAGTCCATATTCCACACCACGTGTTGTGTTGTCTAGACTCTGCTGTGAGCCATTGGAGAAACCTACAGTTCTCATCTAGAACCCAAAGGAATCTGAAAGATTGGCACCTCTAATTCCAGTTTATTAGCTCCACACAGAACAGTTGAGGTATAAAACACATCGGATAAACTTGGACTTTGTGGTGAACTACCCCTTTAAACGAACCAATCATTCATCACTGTTAAATATGCAATGTAAACGAAGCTCCAAATGAACGATACATTCTATTCACTACCACATAGCTCTATGTCAGTGCAATATCTATATCTACAGGAGGAGAATGGTTGCAATGAACTGAAACTGTGAGTGAGAACCACCATTATTAATACATTGCATACAGTTACAAGACATTTCAATCAAAAGGCTGCTACGGTACATCTTGCCGAGACTCCACAATATAATCCTCATTTCcctttccaaatggcaccctattccctacgtagtgcaatAGTTTTGGCCAGAGCCCAATATAAGGCCCtgatcaaagtagtgcactatatagggaatagaatgcaATTTAGAATGCAACCTCTGTATGTAGGTCATTGAGTTAGGATGCCAATAACCAtgacaaccaaccaaccaataaaaCCCAATTGaagaacagggagggagggaaaaaaatGGAAGCTCCCATAATACTGAGCTTGTCAACCCCACGAGATAACCCTCATTTACAGTGATGATGTTATACGTGATAAATAGTGTTGATTCCTGAGAAACCTCCTGAGAATTGTAGGATTTCTCCACATGAAAGCAAATACTTTTGAGTGCTCTacggctgtgtcccaaatagcactctaGTGCCCAATAGTGCCCTATTACATTTGGAATAGGGCCCCCTCTCTCAGCAAAATCCCCATAGGATGCTTGGTAACCATGAGCAGGCGTTTATATTGTGAGATCCCTGACACACACAGAACTGAGGAAGAAAACAAAGGAATTCTTTCAGgaacaaagacacacagagctgCGTTGCATTGCAACCATTCAACCAACAATTAGGAAGGTCACAATAACGTCAGATCTTGGTTGAGACCTGACAAGATAAaggggaaagaagaagaggagtgaCGGCAGAACCAAACCAGGATGGGCGAGGCCTTTCCAAAGCGCTAGGCCCACTGTTGCTGCAGTGTTGCATTGTGGGTATTgtagtaacaggtgtgtgtgttcacctgtaTTGAGTTCTTGTTATGTCACACACTGGCATAGCAGCTGGGTTGGTTAACCTAGCTTGGTGATCTGTAGACCCCCTTCTATCCTCACTGTATCGATGGACGGCAAAGATTTAACTTTGTGAAAAAAGTCAAAGAGCGGATTTCCATCCACAAATATCCGGAAGCGCGTGTGTTCGCAGTGGATCtcc

Function

NR:

description
galectin-related protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2160363 True 7575 lncRNA 0.42 7 62276459 62285346

Neighbor

gene id symbol gene type direction distance location
LOC110531647 LOC106592896 coding upstream 162227 62078013 ~ 62114232 (+)
LOC118943931 NA coding upstream 237775 62036002 ~ 62038690 (+)
LOC110516873 LOC105008825 coding upstream 285803 61823465 ~ 61990656 (+)
LOC118943839 LOC106577359 coding upstream 460785 61743749 ~ 61815674 (+)
LOC118943838 LOC106577289 coding upstream 656262 61615982 ~ 61620197 (+)
LOC110516194 LOC106562987 coding downstream 6393 62291739 ~ 62339471 (+)
LOC118936589 LOC106562987 coding downstream 58055 62343401 ~ 62415570 (+)
LOC118943939 NA coding downstream 130314 62415660 ~ 62416166 (+)
LOC118943940 LOC106563028 coding downstream 140498 62425844 ~ 62471811 (+)
LOC110531772 LOC106569852 coding downstream 196285 62481631 ~ 62483395 (+)
G1888427 NA non-coding upstream 1201 62275042 ~ 62275258 (+)
G1888425 NA non-coding upstream 4868 62270595 ~ 62271591 (+)
G1888408 NA non-coding upstream 13900 62259526 ~ 62262559 (+)
G1888403 NA non-coding upstream 82167 62193248 ~ 62194292 (+)
G1888392 NA non-coding upstream 85272 62158290 ~ 62191187 (+)
G1888450 NA non-coding downstream 17301 62302647 ~ 62303241 (+)
G1888454 NA non-coding downstream 37014 62322360 ~ 62382279 (+)
G1888439 NA non-coding downstream 43671 62329017 ~ 62330287 (+)
G1888465 NA non-coding downstream 76100 62361446 ~ 62362607 (+)
G1888477 NA non-coding downstream 102898 62388244 ~ 62388642 (+)
G1888298 NA other upstream 348602 61926746 ~ 61927857 (+)
G1887835 NA other upstream 998696 61276775 ~ 61277763 (+)
slc35f3b slc35f3 other upstream 2105679 60012705 ~ 60174129 (+)
G1886561 NA other upstream 2488470 59783986 ~ 59787989 (+)
G1886560 NA other upstream 2490364 59749718 ~ 59786095 (+)
G1888544 NA other downstream 279179 62564525 ~ 62565083 (+)

Expression


Co-expression Network