G1888439


Basic Information

Item Value
gene id G1888439
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62329017 ~ 62330287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2160379
ACTTGGCTGGCTGCGTTTTGTTACCACCGGAAACTTTGGGAAGATGTCCCATTATTTCGTTTTTTTCTAAGGACTCAGAAAACGGAGTCAGTGGGAtaacctattcaaATACAGAGTGCCGTGAAACCCTGTCTGGAGATGAAGAGGTCCCAATTAATGTCCCAAGAGAATATACCATGGATTATATATTAGTacatttttgtgaagaaaaatacagttttaaaagtaacacaatgtaTAAACACATTACAACTGGAGCGGGCCAACtgtactgggtgtgcaggcttctgttccagccctgcactaacacacctgattcaatgtATAAACACATTACAACTGGAGTGGGCCGACcatactgggtgtgcaggcttctgttccagccctgcactaacacacctgattcaatgtATAAACACATTACAACTGGAGTGGGCCAACtgtactgggtgtgcaggcttctgttccagccctgcactaacacacctgattcaatgtATCAAACCTAATGAGTTAATAATCAGGTGTGATAATGCTGGACTGGAACAGAAGTCTGTTCCCCCAGTAGATCAGTGATGTTGGACACCTCTGGTATTGACATTTTTCTTTTGTTCACCTGAAATTGTTTTAGTAATAACGGCATACGTGTTACTAAAATGTCTAACCTTTTACCTAGGAGTTAGCTTACACTTTGACAGTGTTGATTTTTGCAGTTAAGTGTTAATGTAACTATTATTCAAGATGaactggtgttgatgttgattgATCACAGATCACAATCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2160379 True 784 lncRNA 0.41 2 62329017 62330287

Neighbor

gene id symbol gene type direction distance location
LOC110531647 LOC106592896 coding upstream 214785 62078013 ~ 62114232 (+)
LOC118943931 NA coding upstream 290333 62036002 ~ 62038690 (+)
LOC110516873 LOC105008825 coding upstream 338361 61823465 ~ 61990656 (+)
LOC118943839 LOC106577359 coding upstream 513343 61743749 ~ 61815674 (+)
LOC118943838 LOC106577289 coding upstream 708820 61615982 ~ 61620197 (+)
LOC118936589 LOC106562987 coding downstream 13114 62343401 ~ 62415570 (+)
LOC118943939 NA coding downstream 85373 62415660 ~ 62416166 (+)
LOC118943940 LOC106563028 coding downstream 95557 62425844 ~ 62471811 (+)
LOC110531772 LOC106569852 coding downstream 151344 62481631 ~ 62483395 (+)
LOC118936402 LOC106591852 coding downstream 246877 62577164 ~ 62761951 (+)
G1888450 NA non-coding upstream 25776 62302647 ~ 62303241 (+)
G1888429 NA non-coding upstream 43671 62276459 ~ 62285346 (+)
G1888427 NA non-coding upstream 53759 62275042 ~ 62275258 (+)
G1888425 NA non-coding upstream 57426 62270595 ~ 62271591 (+)
G1888408 NA non-coding upstream 66458 62259526 ~ 62262559 (+)
G1888465 NA non-coding downstream 31159 62361446 ~ 62362607 (+)
G1888477 NA non-coding downstream 57957 62388244 ~ 62388642 (+)
G1888479 NA non-coding downstream 59166 62389453 ~ 62391809 (+)
G1888298 NA other upstream 401160 61926746 ~ 61927857 (+)
G1887835 NA other upstream 1051254 61276775 ~ 61277763 (+)
slc35f3b slc35f3 other upstream 2158237 60012705 ~ 60174129 (+)
G1886561 NA other upstream 2541028 59783986 ~ 59787989 (+)
G1886560 NA other upstream 2542922 59749718 ~ 59786095 (+)
G1888544 NA other downstream 234238 62564525 ~ 62565083 (+)

Expression


Co-expression Network