G1888879


Basic Information

Item Value
gene id G1888879
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62347247 ~ 62347941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2160940
catgaataaccaccacgctgcgttttggtccgcctctccttcacctcaagaaaaccgttacagaaagagaggaaagagaaagatagTTTCAACATCAACAAGAGGCTCTTCATTAAATACTGTAGATATTTATTTTACTGGGTTTTCTTAATCTATTTCTTATATTATTTTCTTTCTACAGTCCACCCTGTCACCCTACTCCTCCTTCTCTGAGTGTTCACCACCCTACTCCTCCTTCTCTGAGTGTTCACCACCCTACTCCTCCTTCTCTGAATGTTCACCACCCTACTCCTCCTTCTCTGAGTGTTCACCACCCTACTCCTCCTTCTCTGAGTGTTCACCACCCTACTCCTCCTTCTCTGAGTGTTTACCACCCTACTCCTCCTTCTCTGAGTGTTCACCACCCTGTCACCCTACTCCTCCTTCTCTGAGTGTTTACCACCCTACTCCTCCTTCTCTGAGTGTTTACCACCCTACTCCTCCTTCTCTGAGTGTTCACCACCCTACTCCTCCTTCTCTGAGTGTTTAC

Function

NR:

description
PREDICTED: leucine-rich repeat extensin-like protein 5, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2160940 True 529 lncRNA 0.47 3 62347247 62347941

Neighbor

gene id symbol gene type direction distance location
LOC118943938 LOC106577312 coding downstream 54226 62276439 ~ 62310445 (-)
LOC110532867 LOC106562881 coding downstream 73303 62258118 ~ 62273944 (-)
LOC118943937 NA coding downstream 84909 62259487 ~ 62262338 (-)
LOC118943933 LOC106592896 coding downstream 104543 62220901 ~ 62242704 (-)
LOC118943936 LOC106562881 coding downstream 137565 62207261 ~ 62209682 (-)
LOC118943941 LOC105008298 coding upstream 143940 62491881 ~ 62560536 (-)
LOC118936590 LOC106577388 coding upstream 212737 62560678 ~ 62570675 (-)
LOC118943942 LOC106577315 coding upstream 422094 62770035 ~ 62776655 (-)
LOC118943943 LOC102782193 coding upstream 433158 62781099 ~ 62876729 (-)
G1888862 NA non-coding downstream 30293 62316606 ~ 62316954 (-)
G1888761 LOC106592896 non-coding downstream 105715 62199590 ~ 62241532 (-)
G1888832 NA non-coding downstream 125077 62168771 ~ 62222170 (-)
G1888893 NA non-coding upstream 31746 62379687 ~ 62381107 (-)
G1888907 NA non-coding upstream 49527 62397468 ~ 62398248 (-)
G1888913 NA non-coding upstream 59260 62407201 ~ 62407850 (-)
G1888885 NA non-coding upstream 63564 62411505 ~ 62415605 (-)
G1888918 NA non-coding upstream 72607 62420548 ~ 62420758 (-)
G1888836 LOC106562881 other downstream 79742 62260837 ~ 62267505 (-)
LOC118943840 NA other downstream 184858 62152136 ~ 62164324 (-)
G1887761 NA other downstream 1196077 61150056 ~ 61151170 (-)
G1887449 NA other downstream 1521457 60774110 ~ 60825790 (-)

Expression


Co-expression Network