G1888885


Basic Information

Item Value
gene id G1888885
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62411505 ~ 62415605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2160947
taaaaccagtcagtatctggtgggacCATCGTTTGCCtaatgcagcgtgacacatctccttcacatagagttgatcaggctgttgattgtggccagaGGAATGTTGTCCCGCTCCTCTTCCATGGCTGGGGGAAGTTGAtgaatattgtccagttggctggtctcagacgatcccacaggtgaagaagccggatgtggaggtcctgggctagcgtggttacacgtggtctgtggttgtgaggccggttggacggaatgccaaattctctaaaatgatgttggaggcggcttatggtagagaaattaaattaaattctctgacaacagctctggtggagattcctgcagtcagcatgccaattgcacgctccctctaaacttgagacatctgtggcaaaacggaacattttagagtggccttttattgtccccagcacaaggtgtacctgtgtaatgatcatgctgtttaatcagcttcttgatatgccacacctgtcaggtggatggattatcttgacaaaagagaaaatgctcactaactgggaTGGAAAAAAAATAGtgaacaaaatttgagagaaaggagctttttgtgcacatggaacatttctgggaacttttatttcagctcataaaacataggaccaacacttcttgcgcttatttttgttcagtatattcaAAATACAGTAACTTAAAATCCTTTAGCTGGGCTCGATCATGTttgcctggcacaatggaaccaatagaatagttgCAAAActgcaaaccccgcccatctcGTATTCCAGACAGGCTAAAAGCAAAGGATGAAATGATTCGAAAGAttccaaatagtatttgaacccaggtctggtatgAATACATATATAAAAGGCCCTTTGGGGGGGAACATGGAGGAGGTAGAAGTATAGAGTCACAGACACCAGCAGAGCTGACGCTGTGGCTGTGTTCCAAATGCTACCCTAttgcctttatagtgcactacctttgaccagtacccataggcctctggtaaaaaatgagtgcactatgtagagaatagggtgccatttgggacgcatcctatACATTATGGCAGCTAACACGTTACCTGAACCCTATGCCCTGGCATAAGGCCTACATATCATTGACAAAACAAATGACATGAATAGTCTTAAAATGATCTATAAGCTAGTTGGCTAGTGGTAACTAGCTGACCTAGATAACAGTTtggtgtcatgacagtgttaagTCAGTTGTCATAAGCTGACataacaggttatatatatatatatatattatgcctGTTATAACAGGGCTACAATCTAATGAAGGATTTGATGGATTTCCAACCCCAACTCCAGTTTGTGTTATGTCAGTCGTCATAAGATAAGTCACAAGTCATCTGCAGTCACACGTGTTTATAACACCTGTTATGTCATTTGTAAGACACATACATCCCAGATGAATGTGGATGTGTCCCTTAAGATGTGGGAAATAGCAGCACAAAGCAAAACACATAAAAGGCAACGGAGCGTGAGCAAAACAGGAAACACAATAAATATGGCGTTCCACATGAATTAACACTCAATAAACTCCAAGGTTCAGCCGTGATGGTCCTTGACCTCTTGACCCCAATGCGATACATATAAATATTTATGTCACTTTCCTCAATTGAAACTTGATTTGtataacactctctctctctctataatacaAACTAGACTTTTCTAAAATATACCACGTTAAACAAGGTCGTTTAAGAATGCACCCCAAATGccaaccctattccttatatatatatagtgcactacttttgaccagggcccataggggtttGGTCaaaaaaaatagtgcactatgtagggaatagggtgccatttgggaagcactgTAAATGTAACTTCTGCAGTTACCTTGAAAAGTTGCCTTACGGTCTAAAATTCACAATTCTTCAGAAAACATCAATCAATTTCAGTAACACACATGCTGGTGTAGATGCTTTAGCTTCATAAGTTAACATGGTACCTTCTCTATTATCATATTTATCAACCAGAAACCGAATGACGTGAACTAGCTCCTTCTGCCGTGAGCTCGTTTCAGCCTTTTGTCTGTTCAAGTCATCAGCACTTTGTCGGTTCGATGCGTGTAAACATATTTCTCATTCAGTAATAATGGTCAATGGCACGACTTCGAAGGATGGACACTAGAAATACAAGATACGAAATCTCAGAACCCCCGGAATACCACGGGCTGCTGTCAATCGTCCCCAAACCCAATAGAAACTCTGAAATATATAGAGAGCTCCCATTGGATCAGAGAAATGTATTGATCCCGGCTCAGGGAAGTTAAGAGACCTCAATATCTGTTGTTGGACACTTTGATTTCACatatggaataatacattataatatacCAGCAGTAATAAAACACAATGAGTGGACATGCTGGAGAGATGTCATTAAAACAGAACTGACTGGATACTCTTTGCTGTGGTACATGTCCAAGGGCTTTACCCAGCAGCCACCACTCTGTCCAGCAGCAGGGGGGTGATGGGAAGACAAAAGTAATTAAAAGCTGATGACCttctcaggtaacacacacacacacacacacacacaatttattgTTGTATATTCATGTATTTTTAgatgtgtgtgactgtccttgtctatcagtgtaccagtgttttgttacttgtcatgttgtgtgttttaggtggaccccaggaagagtagctgctgcttctgcaaaagatAACAGGGATCCCAATAAACAAACACGACCACTGACAGAACTGTCAACCACGACGGGACAAGCCCCATGCAATCACCGTCAGGACAATCAATCAAACTGCCCTTTTTTATAAGGGGTATGAGGCAAGCACAGGCACACAACAGACTCCAGAGATACTGCATTCCACCAATAACCAGAAGCCAAGGCTACTTCAGCAGCAAGCCAATACTGGGAGGTTAGATCACCTGGTAACCAATAGAGAGACAGGGTCACCACTTCCTGTCAAAACAGGCAACAGGAAGCAAAACAGAACAAAATACAGATAAGAGACCAGAGCTCATATCCACAAATAACCTCAGAATTGGTaggctggtctaggatcaggtcccctcctgtccatgtaatcttattcattatgatttaaatggcaaaactggtcctagatcagcacttccaCTCTGCTTTATGAATTCAGACCCAGAGGCCCCTGGAAATAGCGGTGGACAAAAAtaagtttagttttttttttgtccGACATTGAGTTTAGCATTTCAGTTCATCAAAATATACTTCTATCCATACTGTAGTGCAGATGGGATAGCTCCTCCCCCGTGGGTTCTACTGTCCACCTTCTGCTAGTCGCTCATTGGTTGGTGGGCGTGCCATGATGAGGTTAGTCAGTTGTCTGGGAGGTTTGCTCGCATGCTAATCGCACGGACGTGGACATCGTTCTGTGGCCGAGCGCCTGGACAGAGCCGGGCCGAGCGCCTGGACAGAGCCGGGCCGA
>TU2160948
taaaaccagtcagtatctggtgggacCATCGTTTGCCtaatgcagcgtgacacatctccttcacatagagttgatcaggctgttgattgtggccagaGGAATGTTGTCCCGCTCCTCTTCCATGGCTGGGGGAAGTTGAtgaatattggcgggaactggaacacgccatCCCAAAGATGCTCAATGGGTGGTGAGATGTCTGGTGagcatgcaggccatggaagaactggaacattttcagcttccaggaattgtgtacagatccttgtgacatggatTCAGCATcaccatgctgaaacatgaggtgatggcggcggatgaatggcacgacaatgggccttaggatctcgtcacggcatctctgtgcattcaaattacaatcaataaatgcaattgtgtttgttgtccgtagcttaggcctgcccataccacaacaccaccagcaccatggggcactctgttcacaacattgacagcaaactgctcacccacacgaAGCCAGACACACTGTCTGCTATCTGCCCGGTATAGTTGAAACCAGGAtacatctgtgaagagcacacttctccattgtgccagtggccatcaaaggtgagcatttgcccactgaagtgggtaacgatgccgaactgcagtcaggtcaggaccctgaggcggtttctgacagtttgtgcacaAATAATTTTTTTGTGcagacccagtttcatcagctgtccagttggctggtctcagacgatcccacaggtgaagaagccggatgtggaggtcctgggctagcgtggttacacgtggtctgtggttgtgaggccggttggacggaatgccaaattctctaaaatgatgttggaggccagtacccataggcctctggtaaaaaatgagtgcactatgtagagaatagggtgccatttgggacgcatcctatACATTATGGCAGCTAACACGTTACCTGAACCCTATGCCCTGGCATAAGGCCTACATATCATTGACAAAACAAATGACATGAATAGTCTTAAAATGATCTATAAGCTAGTTGGCTAGTGGTAACTAGCTGACCTAGATAACAGTTtggtgtcatgacagtgttaagTCAGTTGTCATAAGCTGACataacaggttatatatatatatatatattatgcctGTTATAACAGGGCTACAATCTAATGAAGGATTTGATGGATTTCCAACCCCAACTCCAGTTTGTGTTATGTCAGTCGTCATAAGATAAGTCACAAGTCATCTGCAGTCACACGTGTTTATAACACCTGTTATGTCATTTGTAAGACACATACATCCCAGATGAATGTGGATGTGTCCCTTAAGATGTGGGAAATAGCAGCACAAAGCAAAACACATAAAAGGCAACGGAGCGTGAGCAAAACAGGAAACACAATAAATATGGCGTTCCACATGAATTAACACTCAATAAACTCCAAGGTTCAGCCGTGATGGTCCTTGACCTCTTGACCCCAATGCGATACATATAAATATTTATGTCACTTTCCTCAATTGAAACTTGATTTGtataacactctctctctctctataatacaAACTAGACTTTTCTAAAATATACCACGTTAAACAAGGTCGTTTAAGAATGCACCCCAAATGccaaccctattccttatatatatatagtgcactacttttgaccagggcccataggggtttGGTCaaaaaaaatagtgcactatgtagggaatagggtgccatttgggaagcactgTAAATGTAACTTCTGCAGTTACCTTGAAAAGTTGCCTTACGGTCTAAAATTCACAATTCTTCAGAAAACATCAATCAATTTCAGTAACACACATGCTGGTGTAGATGCTTTAGCTTCATAAGTTAACATGGTACCTTCTCTATTATCATATTTATCAACCAGAAACCGAATGACGTGAACTAGCTCCTTCTGCCGTGAGCTCGTTTCAGCCTTTTGTCTGTTCAAGTCATCAGCACTTTGTCGGTTCGATGCGTGTAAACATATTTCTCATTCAGTAATAATGGTCAATGGCACGACTTCGAAGGATGGACACTAGAAATACAAGATACGAAATCTCAGAACCCCCGGAATACCACGGGCTGCTGTCAATCGTCCCCAAACCCAATAGAAACTCTGAAATATATAGAGAGCTCCCATTGGATCAGAGAAATGTATTGATCCCGGCTCAGGGAAGTTAAGAGACCTCAATATCTGTTGTTGGACACTTTGATTTCACatatggaataatacattataatatacCAGCAGTAATAAAACACAATGAGTGGACATGCTGGAGAGATGTCATTAAAACAGAACTGACTGGATACTCTTTGCTGTGGTACATGTCCAAGGGCTTTACCCAGCAGCCACCACTCTGTCCAGCAGCAGGGGGGTGATGGGAAGACAAAAGTAATTAAAAGCTGATGACCttctcaggtaacacacacacacacacacacacacaatttattgTTGTATATTCATGTATTTTTAgatgtgtgtgactgtccttgtctatcagtgtaccagtgttttgttacttgtcatgttgtgtgttttaggtggaccccaggaagagtagctgctgcttctgcaaaagatAACAGGGATCCCAATAAACAAACACGACCACTGACAGAACTGTCAACCACGACGGGACAAGCCCCATGCAATCACCGTCAGGACAATCAATCAAACTGCCCTTTTTTATAAGGGGTATGAGGCAAGCACAGGCACACAACAGACTCCAGAGATACTGCATTCCACCAATAACCAGAAGCCAAGGCTACTTCAGCAGCAAGCCAATACTGGGAGGTTAGATCACCTGGTAACCAATAGAGAGACAGGGTCACCACTTCCTGTCAAAACAGGCAACAGGAAGCAAAACAGAACAAAATACAGATAAGAGACCAGAGCTCATATCCACAAATAACCTCAGAATTGGTaggctggtctaggatcaggtcccctcctgtccatgtaatcttattcattatgatttaaatggcaaaactggtcctagatcagcacttccaCTCTGCTTTATGAATTCAGACCCAGAGGCCCCTGGAAATAGCGGTGGACAAAAAtaagtttagttttttttttgtccGACATTGAGTTTAGCATTTCAGTTCATCAAAATATACTTCTATCCATACTGTAGTGCAGATGGGATAGCTCCTCCCCCGTGGGTTCTACTGTCCACCTTCTGCTAGTCGCTCATTGGTTGGTGGGCGTGCCATGATGAGGTTAGTCAGTTGTCTGGGAGGTTTGCTCGCATGCTAATCGCACGGACGTGGACATCGTTCTGTGGCCGAGCGCCTGGACAGAGCCGGGCCGAGCGCCTGGACAGAGCCGGGCCGA

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2160947 False 3502 lncRNA 0.43 2 62411505 62415605
TU2160948 True 3361 lncRNA 0.44 3 62411505 62415605

Neighbor

gene id symbol gene type direction distance location
LOC118943938 LOC106577312 coding downstream 118484 62276439 ~ 62310445 (-)
LOC110532867 LOC106562881 coding downstream 137561 62258118 ~ 62273944 (-)
LOC118943937 NA coding downstream 149167 62259487 ~ 62262338 (-)
LOC118943933 LOC106592896 coding downstream 168801 62220901 ~ 62242704 (-)
LOC118943936 LOC106562881 coding downstream 201823 62207261 ~ 62209682 (-)
LOC118943941 LOC105008298 coding upstream 76276 62491881 ~ 62560536 (-)
LOC118936590 LOC106577388 coding upstream 145073 62560678 ~ 62570675 (-)
LOC118943942 LOC106577315 coding upstream 354430 62770035 ~ 62776655 (-)
LOC118943943 LOC102782193 coding upstream 365494 62781099 ~ 62876729 (-)
G1888913 NA non-coding downstream 3655 62407201 ~ 62407850 (-)
G1888907 NA non-coding downstream 13257 62397468 ~ 62398248 (-)
G1888893 NA non-coding downstream 30398 62379687 ~ 62381107 (-)
G1888879 NA non-coding downstream 63564 62347247 ~ 62347941 (-)
G1888862 NA non-coding downstream 94551 62316606 ~ 62316954 (-)
G1888918 NA non-coding upstream 4943 62420548 ~ 62420758 (-)
G1888945 LOC106569852 non-coding upstream 66120 62481725 ~ 62484288 (-)
G1888948 NA non-coding upstream 79536 62495141 ~ 62495611 (-)
G1888950 NA non-coding upstream 84057 62499662 ~ 62500188 (-)
G1888952 NA non-coding upstream 86541 62502146 ~ 62503183 (-)
G1888836 LOC106562881 other downstream 144000 62260837 ~ 62267505 (-)
LOC118943840 NA other downstream 249116 62152136 ~ 62164324 (-)
G1887761 NA other downstream 1260335 61150056 ~ 61151170 (-)
G1887449 NA other downstream 1585715 60774110 ~ 60825790 (-)

Expression


Co-expression Network